Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4e02
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 30 1.5
At4g29990.1 68417.m04266 light repressible receptor protein kina... 30 1.5
At4g38730.1 68417.m05486 expressed protein 30 1.9
At4g29780.1 68417.m04241 expressed protein 29 2.5
At4g09640.1 68417.m01584 expressed protein several hypothetical ... 29 4.4
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR... 29 4.4
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr... 28 5.9
At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR... 28 5.9
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 28 5.9
At3g23870.1 68416.m03000 permease-related low similarity to puri... 28 5.9
At1g34470.1 68414.m04283 permease-related low similarity to puri... 28 5.9
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ... 28 7.7
At1g71900.1 68414.m08312 expressed protein 28 7.7
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +1
Query: 589 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITI 741
D++++C+ C I + C++ L CA A++ +H G +T+
Sbjct: 388 DENIICQACILPIYEGNYYSCMDQCDFVLHEACANASRKKDHALHGHPLTL 438
>At4g29990.1 68417.m04266 light repressible receptor protein kinase
identical to light repressible receptor protein kinase
[Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 876
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Frame = +1
Query: 403 VKMNEDTPPFY-FINTRDNFRDNIAEHVFDMLLERHGSFENYPIVNTA---FINSLIVNG 570
V + E+ PFY F +TR D + + +++L+R G PI+N IN +
Sbjct: 303 VILAENFRPFYLFTDTRSTV-DPVGRKMNEIVLQRTGVSTLPPIINAIEIYQINEFLQLP 361
Query: 571 FKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNIT 738
VD ++ KNW D C+ + C +++ +S N++
Sbjct: 362 TDQQDVDAMTKIKFKYRVKKNWQGDPCVPVDNSWEGLECLHSDNNTSPKSIALNLS 417
>At4g38730.1 68417.m05486 expressed protein
Length = 326
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 657 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVD 547
FN + PI+Y FT L ++ I+FK N Q D
Sbjct: 237 FNAAIVSPIYYVMFTTL--TIVASAIMFKDWNGQNTD 271
>At4g29780.1 68417.m04241 expressed protein
Length = 540
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 9 IINMDGSVVSMCVDNAFAYTTDDLLKNISFSHSKCA 116
++N DG +C+ N + T D +L+ S S + A
Sbjct: 365 VVNADGIFTDVCIGNPGSLTDDQILEKSSLSRQRAA 400
>At4g09640.1 68417.m01584 expressed protein several hypothetical
proteins - Arabidopsis thaliana
Length = 386
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 657 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQA 553
FNT V PI+Y FT L ++ +I+FK + Q+
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFKDWDRQS 283
>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 776
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 226 ILKLNFCNSLIEPTSTDLSINPLLN 152
IL L FC SL+E S+ ++N LLN
Sbjct: 655 ILNLKFCESLVELPSSIRNLNKLLN 679
>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 895
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 183 DVGSISELQKFNFKINRLTSYISNIFE-YEFVVLEHNLSTVHVINAETKTKLGHINVSLN 359
+VGS+ +LQK N N+L S+ S + + VL+ +++ ET KL + + LN
Sbjct: 425 NVGSLKDLQKLNLSFNQLESFGSELEDLVNLEVLDLQNNSLQGSVPETLGKLKKLRL-LN 483
Query: 360 QNDPNVL 380
+ N++
Sbjct: 484 LENNNLV 490
>At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1145
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 226 ILKLNFCNSLIEPTSTDLSINPLL 155
ILKL FC SL+E S+ ++N LL
Sbjct: 654 ILKLGFCKSLVELPSSIRNLNKLL 677
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 30 VVSMCVDNAFA-YTTDDLLKNISFSHSKCAPFKLQNYTVLKRLSNGFI 170
V S+ +N FA D LLK +S + K P+K Q V ++ S+G I
Sbjct: 1644 VFSLLDENIFAGMNKDQLLKKLSNTVVKDLPYKCQKIVVTEQDSSGCI 1691
>At3g23870.1 68416.m03000 permease-related low similarity to purine
permease [Arabidopsis thaliana] GI:7620007; contains 9
predicted transmembrane domains; contains Pfam PF05653:
Protein of unknown function (DUF803); identified as
COG0697, Permeases of the drug/metabolite transporter
(DMT) superfamily
Length = 335
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 657 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 571
FNT V P++Y FT +I +I+FK
Sbjct: 240 FNTAVISPVYYVMFT--TFTIIASMIMFK 266
>At1g34470.1 68414.m04283 permease-related low similarity to purine
permease [Arabidopsis thaliana] GI:7620007
Length = 368
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 657 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 571
FNT V PI+Y FT L ++ +I+FK
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFK 277
>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 656
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/54 (20%), Positives = 26/54 (48%)
Frame = +1
Query: 589 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAV 750
+++++C+ C I + C++ + L CA A++ +H +T+ V
Sbjct: 388 NENIICQACILPIYEGNYYSCMDQCNFILHEACANASRKKDHALHSHPLTLKVV 441
>At1g71900.1 68414.m08312 expressed protein
Length = 343
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 657 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 571
FNT + PI+Y FT L ++ +I+FK
Sbjct: 251 FNTAIVSPIYYVMFTSL--TILASVIMFK 277
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,785,357
Number of Sequences: 28952
Number of extensions: 284213
Number of successful extensions: 782
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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