Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4d21
(362 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 28 0.51
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 0.68
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 27 1.2
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 2.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 2.7
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 4.8
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 24 6.3
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 24 8.3
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 24 8.3
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 24 8.3
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.9 bits (59), Expect = 0.51
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 124 SSAFGVLHRPVDPGSVGHAAALDWAGRGTFIDVATSVG 237
S+A G + + D G+ H ++ W G+GT + V T G
Sbjct: 151 SAASGKVVQLHDFGATNHVTSVLWTGKGTQLAVGTDSG 188
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 0.68
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -1
Query: 299 TQSPSSEHRCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGSTGR*RTPNAE 126
T++ ++++ A PP P A + V P + AAA P P + P AE
Sbjct: 353 TEAAAAQYPQAAFPPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAAAPAAE 410
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 26.6 bits (56), Expect = 1.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -1
Query: 293 SPSSEHRCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGST 153
+PS C P+ PL T+ + N+ P+ + ACP+ ++
Sbjct: 47 TPSPNSECRPLTPLNSPFRRTVEGDTANLQAPSPT---ACPSFDSAS 90
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.8 bits (54), Expect = 2.1
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -1
Query: 236 PTLVA-TSMNVPRPAQSRAAACPTLP 162
PT+++ T N+PRP +++A P +P
Sbjct: 138 PTILSSTDSNIPRPGTVKSSASPFVP 163
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 2.7
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = -1
Query: 278 HRCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGSTGR 147
+R P+PP +++VP P+ + P LP + R
Sbjct: 1017 NRVVPLPPTASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSSR 1060
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 24.6 bits (51), Expect = 4.8
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 269 APIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGSTGR 147
AP+PP + PT ++ N+ S AA+ P + + G+
Sbjct: 79 APVPPAGNTNTPTTSNSNQNLENNVTS-AASMPAILNAAGQ 118
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 24.2 bits (50), Expect = 6.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 275 RCAPIPPLTGAHHPTLVATSMNVP 204
R P+ P + + HP+L + ++VP
Sbjct: 256 RALPLAPASNSQHPSLSSQPVSVP 279
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 23.8 bits (49), Expect = 8.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 145 EELRTQNYFTQGIYFHHLVFKSVRSQQELSRE 50
E RT+ + GI H VF+ V +L E
Sbjct: 358 EAYRTERLLSSGISQDHSVFREVNPSAKLEEE 389
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 23.8 bits (49), Expect = 8.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 163 GSVGHAAALDWAGRGTFIDVATSVG 237
G V +A D RGT V TSVG
Sbjct: 31 GHVSNAVPFDIEARGTHFLVTTSVG 55
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 23.8 bits (49), Expect = 8.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -2
Query: 127 NYFTQGIYFHHLVFKSVRSQQELSRE 50
NY TQ + HH F RS L E
Sbjct: 712 NYHTQAVSIHHPSFYISRSDVPLEEE 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,547
Number of Sequences: 5004
Number of extensions: 32694
Number of successful extensions: 91
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -