Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d21
         (362 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    29   1.3  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   2.3  
U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone...    28   2.3  
AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear recep...    28   2.3  
AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear recep...    28   2.3  
AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear recep...    28   2.3  
AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical ...    28   2.3  
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U53344-2|AAP13769.1|  301|Caenorhabditis elegans Collagen protei...    27   5.3  
U53344-1|AAA96223.1|  363|Caenorhabditis elegans Collagen protei...    27   5.3  
U39644-4|AAA80357.2|  301|Caenorhabditis elegans Collagen protei...    27   5.3  
U39644-3|AAA80358.2|  301|Caenorhabditis elegans Collagen protei...    27   5.3  
U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF098999-2|AAC68728.3|  369|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    26   7.0  

>U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical
           protein C34E10.8 protein.
          Length = 1024

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -1

Query: 314 LPWVDTQSPSSEHRCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPT 168
           +P    QSP +  R  P+PP      P  V TS  V R   S + A P+
Sbjct: 675 MPVAMNQSPQAVRRQTPVPPYR-LMGPQRVTTSYTVVRSGSSSSVAGPS 722


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 266 PIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGSTG 150
           P PP  G H     +TS + PRPA    ++ P  P   G
Sbjct: 511 PPPPAPGPHKEQRRSTSKDPPRPAPPPVSSIPPPPPIAG 549


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -1

Query: 341  VNAASTAGTLPWVDTQSPSSEHRCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLP 162
            V   ST G+     + S +S    +P+P  + + +P+   +S   P P+QS +    T  
Sbjct: 1233 VTTGSTEGSST-SGSSSATSLSSSSPVPSTSQSPNPSTSGSSTPTPNPSQSTSPVVSTTT 1291

Query: 161  G---STGR*RTPN 132
            G   S G  +TP+
Sbjct: 1292 GEMTSHGSTQTPS 1304


>U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform a protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -1

Query: 302 DTQSPSSEHRCAPI-PPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGS 156
           +T    + H  +PI  P T  H P  +  +     P QS     PT PGS
Sbjct: 38  NTNHQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQSDQETAPTTPGS 87


>AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -1

Query: 302 DTQSPSSEHRCAPI-PPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGS 156
           +T    + H  +PI  P T  H P  +  +     P QS     PT PGS
Sbjct: 35  NTNHQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQSDQETAPTTPGS 84


>AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -1

Query: 302 DTQSPSSEHRCAPI-PPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGS 156
           +T    + H  +PI  P T  H P  +  +     P QS     PT PGS
Sbjct: 44  NTNHQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQSDQETAPTTPGS 93


>AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 527

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -1

Query: 302 DTQSPSSEHRCAPI-PPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGS 156
           +T    + H  +PI  P T  H P  +  +     P QS     PT PGS
Sbjct: 37  NTNHQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQSDQETAPTTPGS 86


>AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical
            protein Y18H1A.3 protein.
          Length = 1258

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -1

Query: 275  RCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGSTGR*RTPNAELFHPRHILSS 96
            R +P P    A   +++ TS   P+P  + +AA   LP       TPNA+L   R + +S
Sbjct: 961  RGSPSPVDGAAQFTSMIETSRRQPQPLGTSSAAHDHLPAF-----TPNAKLLEWRSLSAS 1015

Query: 95   SRF 87
              F
Sbjct: 1016 LGF 1018


>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical protein
            F54D11.2 protein.
          Length = 1145

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -1

Query: 329  STAGTLPWVDTQSPSSEHRCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLP 162
            ++ G  P V  +    +HR  P PPL    +P  VAT M+   P  S A   P  P
Sbjct: 1083 ASMGASPRVIERGDFRDHRPPPPPPLPILQNP--VATPMSQQPPLPSPAPPPPRGP 1136


>U53344-2|AAP13769.1|  301|Caenorhabditis elegans Collagen protein
           166, isoform b protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 144 SSTGRSGKCWACGGSRLGRPG 206
           SS G  G C  CG S  G PG
Sbjct: 98  SSVGHQGGCCGCGVSAAGPPG 118


>U53344-1|AAA96223.1|  363|Caenorhabditis elegans Collagen protein
           166, isoform a protein.
          Length = 363

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 144 SSTGRSGKCWACGGSRLGRPG 206
           SS G  G C  CG S  G PG
Sbjct: 160 SSVGHQGGCCGCGVSAAGPPG 180


>U39644-4|AAA80357.2|  301|Caenorhabditis elegans Collagen protein
           168 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 144 SSTGRSGKCWACGGSRLGRPG 206
           SS G  G C  CG S  G PG
Sbjct: 98  SSVGHQGGCCGCGVSAAGPPG 118


>U39644-3|AAA80358.2|  301|Caenorhabditis elegans Collagen protein
           167 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 144 SSTGRSGKCWACGGSRLGRPG 206
           SS G  G C  CG S  G PG
Sbjct: 98  SSVGHQGGCCGCGVSAAGPPG 118


>U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical
           protein R11F4.1 protein.
          Length = 502

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 190 DWAGRGTFIDVATSV-GWWAPVRGGIGAHRCSED 288
           D  GR       T + GW A V GGIGA + S D
Sbjct: 429 DIMGRDIVTPKITEISGWGAAVAGGIGAQQISLD 462


>AF098999-2|AAC68728.3|  369|Caenorhabditis elegans Hypothetical
           protein W04C9.5 protein.
          Length = 369

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 207 APAGPI*SRRMPNTSRIDRSMKNSERRTISPK 112
           +PA P  +RR   TS I R    S  RT+SP+
Sbjct: 26  SPASPAATRRSLPTSPISRRSLPSTPRTVSPR 57


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 178 HAQHFPDRPVDEELRTQNYFTQGIYFHHLVFKSVRSQQ 65
           +A+    RP   E  T    +QG+Y+   V K VR++Q
Sbjct: 207 YARRMCKRPYRSEKSTAISDSQGVYYDGQVLKGVRAKQ 244


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 178 HAQHFPDRPVDEELRTQNYFTQGIYFHHLVFKSVRSQQ 65
           +A+    RP   E  T    +QG+Y+   V K VR++Q
Sbjct: 207 YARRMCKRPYRSEKSTAISDSQGVYYDGQVLKGVRAKQ 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,180,680
Number of Sequences: 27780
Number of extensions: 207546
Number of successful extensions: 689
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)