Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d21
         (362 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   0.64 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   2.6  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   3.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   3.4  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    21   4.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   5.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   7.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.8 bits (49), Expect = 0.64
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 127 NYFTQGIYFHHLVFKSVRSQQELSR 53
           +YF + IYFH +V  S+ +   + R
Sbjct: 453 SYFIEPIYFHSIVLGSLLNPSHMYR 477


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = -3

Query: 174 PNTSRIDRSMKNSERRTISPKAYTFIISFLKASAVNKNSAARKLRXEGRLMEITQRKT 1
           P T +    MK    +    + + F ISF K  +   NS     R +  L++   R T
Sbjct: 353 PETLQFPSGMKIISSKKDRQELWIFTISFQKYMSGTLNSNETNFRIQAGLVDELVRGT 410


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 141 SSSTGRSGKCWACGGSRLGRPGHI--HRC 221
           +S+TG S +C+ C  S L +  HI  H C
Sbjct: 82  ASTTGFSKECYCCRESYL-KERHITLHHC 109


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 141 SSSTGRSGKCWACGGSRLGRPGHI--HRC 221
           +S+TG S +C+ C  S L +  HI  H C
Sbjct: 82  ASTTGFSKECYCCRESYL-KERHITLHHC 109


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = -3

Query: 177 MPNTSRIDRS 148
           +PNTSR+D+S
Sbjct: 97  VPNTSRLDKS 106


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 327 YSGYPPLGRYPISVFRAPV 271
           +  +PPLGR+ +   R  V
Sbjct: 415 FQEFPPLGRFAVRDMRQTV 433


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 327 YSGYPPLGRYPISVFRAPV 271
           +  +PPLGR+ +   R  V
Sbjct: 415 FQEFPPLGRFAVRDMRQTV 433


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/26 (30%), Positives = 10/26 (38%)
 Frame = -2

Query: 256 PLQGPTTLHWWLHR*MCPGRPNLEPP 179
           P + P   HW +    C   P   PP
Sbjct: 376 PSKNPAMGHWQMSCVACSPPPRQTPP 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,758
Number of Sequences: 438
Number of extensions: 2536
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)