Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d20
         (308 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q55F59 Cluster: Putative uncharacterized protein; n=1; ...    31   3.8  
UniRef50_Q9S9L9 Cluster: T24D18.26 protein; n=17; Magnoliophyta|...    31   5.0  
UniRef50_UPI0000ECA673 Cluster: KIAA1529 (KIAA1529), mRNA; n=6; ...    31   6.6  
UniRef50_Q11V45 Cluster: Putative uncharacterized protein; n=1; ...    31   6.6  

>UniRef50_Q55F59 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 825

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 78  NYTSNQH*NAQNQDKQVNL*KKIISCSFWCKIIYLIYLLDHYN 206
           N  +N + N  N + + N+ K I + + WCK    +Y ++ YN
Sbjct: 166 NNNNNSNNNNNNNNNEYNIRKSIENLTEWCKYSNQLYEIEKYN 208


>UniRef50_Q9S9L9 Cluster: T24D18.26 protein; n=17;
           Magnoliophyta|Rep: T24D18.26 protein - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 412

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 144 FFFIDLPVCLDFVHFNVDCWCNFNVRAWYDRMLV 43
           F  + + + LDFVH   D W  ++ + WY  +LV
Sbjct: 152 FLLVQVVLLLDFVHGWNDTWVGYDEQFWYAALLV 185


>UniRef50_UPI0000ECA673 Cluster: KIAA1529 (KIAA1529), mRNA; n=6;
           Gallus gallus|Rep: KIAA1529 (KIAA1529), mRNA - Gallus
           gallus
          Length = 1522

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +2

Query: 11  MSVKLRLSXRETNILSYHARTLKLHQQSTLKCTKSRQTGKSIKKNHFVFI 160
           +S +LR    ETNI S  A  L LH++  L+C    + G+++KK    F+
Sbjct: 739 LSCELRRKNIETNIFSVRAAELLLHEKH-LEC-HCNEVGEALKKERAEFL 786


>UniRef50_Q11V45 Cluster: Putative uncharacterized protein; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: Putative
           uncharacterized protein - Cytophaga hutchinsonii (strain
           ATCC 33406 / NCIMB 9469)
          Length = 153

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 84  TSNQH*NAQNQDKQVNL*KKIISCSFWCKIIYLIYLLDHYNLFL 215
           T N H     +D +VNL  K+   + W  +++LI  LD+++L++
Sbjct: 12  THNMHTQHTLEDIKVNL--KLKLAALWASLMFLIIYLDYFHLYM 53


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,434,811
Number of Sequences: 1657284
Number of extensions: 3907635
Number of successful extensions: 7501
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7495
length of database: 575,637,011
effective HSP length: 79
effective length of database: 444,711,575
effective search space used: 10228366225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)