Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d20
         (308 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   1.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   1.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   1.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   1.3  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   1.7  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   3.9  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   3.9  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   3.9  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   3.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   3.9  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    20   6.8  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    20   6.8  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    19   9.0  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    19   9.0  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 159  FWCKIIYLIYLLDHYNLFL 215
            FWC +  +IYLL   +++L
Sbjct: 1026 FWCIVPGIIYLLSIPSMYL 1044


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 159  FWCKIIYLIYLLDHYNLFL 215
            FWC +  +IYLL   +++L
Sbjct: 1026 FWCIVPGIIYLLSIPSMYL 1044


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 159  FWCKIIYLIYLLDHYNLFL 215
            FWC +  +IYLL   +++L
Sbjct: 1026 FWCIVPGIIYLLSIPSMYL 1044


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 159  FWCKIIYLIYLLDHYNLFL 215
            FWC +  +IYLL   +++L
Sbjct: 1026 FWCIVPGIIYLLSIPSMYL 1044


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 71  TLKLHQQSTLKCTKSRQTGKSIKKNHFVFILV*NNIF 181
           TLK H+ STL     +   K + +  + F++V + +F
Sbjct: 89  TLKRHKWSTLFEILLKLESKDLSRTFYGFVIVAHLLF 125


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 50  ILSYHARTLKLHQ 88
           +L+YH RT  +H+
Sbjct: 295 VLNYHHRTADIHE 307


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 50  ILSYHARTLKLHQ 88
           +L+YH RT  +H+
Sbjct: 295 VLNYHHRTADIHE 307


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 50  ILSYHARTLKLHQ 88
           +L+YH RT  +H+
Sbjct: 295 VLNYHHRTADIHE 307


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 50  ILSYHARTLKLHQ 88
           +L+YH RT  +H+
Sbjct: 295 VLNYHHRTADIHE 307


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 50  ILSYHARTLKLHQ 88
           +L+YH RT  +H+
Sbjct: 295 VLNYHHRTADIHE 307


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 211 FLMRIVIYINICFFV 255
           F M ++ ++N  FFV
Sbjct: 153 FQMYVLFFVNFAFFV 167


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 211 FLMRIVIYINICFFV 255
           F M ++ ++N  FFV
Sbjct: 153 FQMYVLFFVNFAFFV 167


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 63  WYDRMLVS 40
           WY RML+S
Sbjct: 167 WYPRMLIS 174


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 63  WYDRMLVS 40
           WY RML+S
Sbjct: 167 WYPRMLIS 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,576
Number of Sequences: 336
Number of extensions: 1199
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5624413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)