Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d20
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    25   2.6  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    24   4.5  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    24   5.9  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    24   5.9  

>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -3

Query: 201 NDQANISNILFYTKMNTK*FFFIDLPVCLDFVHFNVDCWCNFNVRA 64
           N    +S+++FY  M     +  D   C++    +    C FN+R+
Sbjct: 82  NSVFQVSSLMFYGLMMEFFGYSFDRVGCMELAFISFSAACYFNIRS 127


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 231 DHNTH*ERGYNDQANISNILFYTKMNT 151
           D  TH  R YN+  ++S    Y  +NT
Sbjct: 166 DPKTHVHRPYNEHKSLSGTARYMSINT 192


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 231 DHNTH*ERGYNDQANISNILFYTKMNT 151
           DH TH    Y +  N++    Y  +NT
Sbjct: 160 DHKTHLHIPYRENKNLTGTARYASINT 186


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
 Frame = +3

Query: 147 ISCSFWCKIIYLI----YLLDHYNL 209
           +SC F+  IIYL+    YLL  Y+L
Sbjct: 267 LSCHFYYSIIYLLNSMFYLLTFYSL 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,087,412
Number of Sequences: 5004
Number of extensions: 18194
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)