Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d20
         (308 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    25   9.2  
03_05_0006 + 19527479-19528769,19529693-19530105,19530220-195304...    25   9.2  
02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106...    25   9.2  

>09_04_0087 +
           14476539-14476675,14478876-14479635,14479720-14479871,
           14479958-14480024,14480632-14480831,14480915-14481068,
           14481585-14481669,14481766-14481857,14482575-14482766,
           14482867-14482992,14483072-14483125,14483494-14483550,
           14484509-14484606,14484703-14485038,14485116-14485203,
           14486891-14487016,14487082-14487138,14488054-14488133,
           14488228-14488270,14488948-14489034,14489331-14489420,
           14489996-14490054,14490141-14490231,14490330-14490495,
           14490662-14490755,14491787-14492909
          Length = 1537

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 120 CLDFVHFNVDCWC 82
           CL F+H N++ WC
Sbjct: 599 CLAFIHLNLNGWC 611


>03_05_0006 +
           19527479-19528769,19529693-19530105,19530220-19530430,
           19530531-19530768,19530847-19530997,19531240-19531542
          Length = 868

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +3

Query: 3   RLPCLSNCAC 32
           RL CLSNCAC
Sbjct: 376 RLSCLSNCAC 385


>02_05_1040 -
           33709588-33709880,33709960-33710200,33710498-33710672,
           33710781-33710892,33711906-33712145,33712253-33712436
          Length = 414

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 165 TKMNTK*FFFIDLPVCLDFVHFNVDCWCNFNVRAWYDRMLV 43
           +K  +  F  + + + LDFVH   + W   + + WY  +LV
Sbjct: 145 SKFGSGLFLLVQVVLLLDFVHGWNENWVAKDEQFWYMALLV 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,065,881
Number of Sequences: 37544
Number of extensions: 89225
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)