Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d20
         (308 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61946-6|AAC24391.1|  137|Caenorhabditis elegans Hypothetical pr...    27   3.5  
U42830-5|AAC48280.2|  437|Caenorhabditis elegans Hypothetical pr...    26   4.7  
Z68882-2|CAA93110.1|  306|Caenorhabditis elegans Hypothetical pr...    25   8.1  

>U61946-6|AAC24391.1|  137|Caenorhabditis elegans Hypothetical
           protein F47C12.6 protein.
          Length = 137

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -3

Query: 114 DFVHFNVDCWCNFNVRAWYDRMLVSRHDRRSLTDMV 7
           D +HF+V   C+ +++ W   +++  HD  +  D++
Sbjct: 18  DPIHFDVAIHCDSSIKFWCGDIIIYEHDTWTSHDIL 53


>U42830-5|AAC48280.2|  437|Caenorhabditis elegans Hypothetical
           protein C53B7.7 protein.
          Length = 437

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 126 VNL*KKIISCSFWCKIIYLIYLLDHYNLFLN 218
           +N  +  I C F+CK++++ Y  D+   F+N
Sbjct: 84  INFRRSHICCHFFCKLLFIYY--DYQYRFIN 112


>Z68882-2|CAA93110.1|  306|Caenorhabditis elegans Hypothetical
           protein C47E12.2 protein.
          Length = 306

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 14  SVKLRLSXRETNILSYHARTL 76
           S+ L+   RE N+LSY  RTL
Sbjct: 110 SILLKNMKRENNVLSYSVRTL 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,972,147
Number of Sequences: 27780
Number of extensions: 101567
Number of successful extensions: 217
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)