Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d19
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)                     115   4e-26
SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)                     92   5e-19
SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)                  36   0.042
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.52 
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.69 
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)                   31   1.2  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_41565| Best HMM Match : Tet_res_leader (HMM E-Value=7.5)            29   2.8  
SB_15572| Best HMM Match : Planc_extracel (HMM E-Value=9.3)            29   2.8  
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  29   2.8  
SB_26058| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   6.4  
SB_44863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            28   6.4  
SB_38423| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)                 28   8.5  
SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)                 28   8.5  

>SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 399

 Score =  115 bits (276), Expect = 4e-26
 Identities = 59/149 (39%), Positives = 89/149 (59%)
 Frame = +1

Query: 256 IDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRD 435
           +D+  D+ + LYP+E+ P  ++++R  V+ EL++LQ   EP+            I    D
Sbjct: 6   VDFAMDVYKGLYPDEEVPTSLVEKRVEVVKELKDLQAQTEPI------------INCFSD 53

Query: 436 PKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLS 615
           P+            + K EM+D +Y+ AK++YECGNY  +A YLYF + +    D N L+
Sbjct: 54  PEFTA---------QIKPEMLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTNSLN 104

Query: 616 VLWGKLASEILVQNWDGALDDLTKLREFI 702
            LWGKLASEIL+QNWD AL+DL +L++ I
Sbjct: 105 ALWGKLASEILMQNWDTALEDLNRLKDVI 133


>SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 215

 Score = 91.9 bits (218), Expect = 5e-19
 Identities = 39/70 (55%), Positives = 53/70 (75%)
 Frame = +1

Query: 493 MIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQNWDGAL 672
           M+D +Y+ AK++YECGNY  +A YLYF + +    D N L+ LWGKLASEIL+QNWD AL
Sbjct: 1   MLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTNSLNALWGKLASEILMQNWDTAL 60

Query: 673 DDLTKLREFI 702
           +DL +L++ I
Sbjct: 61  EDLNRLKDVI 70


>SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)
          Length = 829

 Score = 35.5 bits (78), Expect = 0.042
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +1

Query: 370 VEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYV 549
           +E  ++L +   V +T  T    + L N L   KEY+  +E+    YRL K R   G + 
Sbjct: 708 MEKAIKLQKELGVGETEHTATFQRNLANVLLALKEYDLALEVAQESYRLRKER--LGTHP 765

Query: 550 ESASYLYFCQLV 585
           E+A  LY   ++
Sbjct: 766 ETARILYMIGVI 777


>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 262 YVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKT 417
           Y+ D   ++YP  DT  EII +  V +  ++E  + +  VL  ++R+ + KT
Sbjct: 215 YLVDCPGVVYPTGDTETEIILKGVVRVENVKEAAEHIPTVLERVKREYLAKT 266


>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = +1

Query: 214 LLRAKLEILSKTNMIDYVTDIRRML-----YPEEDTPEEIIQRRGV 336
           LLR  L+++ K N+I+Y  D+ + L     Y EE  PE + + RG+
Sbjct: 314 LLREVLKVIRKDNLIEYTADVGKELLKGLQYIEERHPEFVSKARGL 359


>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1805

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/62 (22%), Positives = 36/62 (58%)
 Frame = +1

Query: 190  KETYDQSELLRAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDA 369
            +E   ++E +R +L+   K  + + ++D+   +  EE+    + + +  +L E+Q+L+D+
Sbjct: 931  REVAQETEEMRQRLQT-KKNELEELLSDLEGRITEEEENVLALTEDKKKLLKEIQDLEDS 989

Query: 370  VE 375
            +E
Sbjct: 990  LE 991


>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
          Length = 801

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +1

Query: 280 RMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLR-LMQRDDVMKTIETMRDPKTLINH 456
           R LYPE +     + +  V    + ELQ A+    R L+++   + TI  + D KTL+ H
Sbjct: 511 RELYPETEPAGLFVAKVDVSEVPMAELQAALPAFERQLLRKGYGLYTISGVLDRKTLVEH 570

Query: 457 LSTNKEYEFKIEMIDSM 507
           L  ++ +  + ++  +M
Sbjct: 571 LCASEGFREQGDLAAAM 587


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
 Frame = +1

Query: 322  QRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK-TLINHLST-----NKEYEF 483
            +R   +L +++EL   V+ + + +++  ++K ++ + D K TLI   +T     NKE+E 
Sbjct: 1855 EREKELLQQVEELSTQVKTLEQRIEQLVIVK-MDALHDQKATLIEEHNTAIEKLNKEHEA 1913

Query: 484  KIEMIDSMYR 513
            K+E ++ +Y+
Sbjct: 1914 KLESVERLYK 1923


>SB_41565| Best HMM Match : Tet_res_leader (HMM E-Value=7.5)
          Length = 58

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 457 LSTNKEYEFKIEMIDSMYRLAKYRYECGNYVES 555
           +S N  YE K++   S  RLAK+R+   +Y E+
Sbjct: 15  MSCNSSYEAKLKRSSSRMRLAKHRHILHHYTEN 47


>SB_15572| Best HMM Match : Planc_extracel (HMM E-Value=9.3)
          Length = 45

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 457 LSTNKEYEFKIEMIDSMYRLAKYRYECGNYVES 555
           +S N  YE K++   S  RLAK+R+   +Y E+
Sbjct: 2   MSCNSSYEVKLKRSKSRMRLAKHRHILHHYTEN 34


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
 Frame = +1

Query: 181  LAAKETYDQSELLRAKLEILSKTNMIDYVTDIRRMLYPEEDTP-EEIIQRRGVVLSELQE 357
            L  KE Y+ ++L R K E        + +T+       EED   EE I+++      LQE
Sbjct: 1186 LDVKEQYE-AQLARVKKERNKLKQKYEELTEEDE----EEDAIYEETIEKQN---KRLQE 1237

Query: 358  LQDAVEPVLRL------MQRDDVMKTIETMRDPKTLINHL---STNKEYEFK 486
            L++ VE + R         RDD+ K  ET+   K ++N L   +T ++ +F+
Sbjct: 1238 LKEEVENLKRKNGIEEKRLRDDINKLSETLEKEKRMVNQLKNEATEQKNDFR 1289


>SB_26058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 457 LSTNKEYEFKIEMIDSMYRLAKYRYECGNYVES 555
           LS N  YE K++   S  RLAK+R+   +Y E+
Sbjct: 37  LSCNLNYEAKLKRSKSRLRLAKHRHILHHYTEN 69


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/94 (21%), Positives = 41/94 (43%)
 Frame = +1

Query: 337  VLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRL 516
            ++ +++ELQ+  E      QR+D  +  E +R   +L+      +  E   +M +   + 
Sbjct: 2663 LIQQMRELQNQSEKYRFQKQREDCEREKEHLRQQVSLMRSKGNTQSEELIQQMRELQNQS 2722

Query: 517  AKYRYECGNYVESASYLYFCQLVMSPTDKNYLSV 618
             KYR++  +     S      + MSP  ++   V
Sbjct: 2723 EKYRFQVDDLTRQLSRK---DITMSPQSQSRTEV 2753


>SB_44863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 381 YWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHSSDVSNI 262
           Y+L+CIL+ L+  KNY    +  F   F  ++H+  +S +
Sbjct: 57  YFLHCILESLKRGKNYVRIFFADFSKGFDLVDHNVLMSEL 96


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/101 (21%), Positives = 48/101 (47%)
 Frame = +1

Query: 205  QSELLRAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVL 384
            Q+E+ +A  E+    +  +    I   L    + PE    +RG+      + +  V  V 
Sbjct: 1041 QAEISKAISEVTENDDKEN--VSIMNELKKNVEEPERFHNQRGI--DHETDFRKMVRAVF 1096

Query: 385  RLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSM 507
             +++  D+ + I+++++  ++   +  NKE E KIE ++ M
Sbjct: 1097 AIIE--DLKERIKSVKENTSISTEVLFNKEMEKKIEELEGM 1135


>SB_38423| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)
          Length = 329

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 381 YWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHSSDVSNI 262
           Y+L+CIL+ L+  +NY    +  F   F  ++H+  +S +
Sbjct: 90  YFLHCILELLERGENYVRIFFADFSKGFDLVDHNVLMSEL 129


>SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)
          Length = 710

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 381 YWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHSSDVSNI 262
           Y+L+CIL+ L+  +NY    +  F   F  ++H+  +S +
Sbjct: 417 YFLHCILELLERGENYVRIFFADFSKGFDLVDHNVLMSEL 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,997,817
Number of Sequences: 59808
Number of extensions: 388219
Number of successful extensions: 979
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)