Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d19
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.6  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 549 HIISTFIAIFGQTIHAIDHFNFKLILLVCRKMVYKS 442
           HI+S         I AI +    LIL+ CRK V KS
Sbjct: 37  HIVSIVFYSVLMIISAIGNTTV-LILITCRKRVSKS 71


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 324 LYNFFRSVFFRIEH 283
           +Y+FF+   FRI+H
Sbjct: 337 IYDFFKDSSFRIQH 350


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 448 INHLSTNKEYEFKI 489
           +NHL T+ EY++++
Sbjct: 761 VNHLLTHHEYDYEL 774


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 109 SKFDLTFKIGQYLXRHXVFPLLEFLAAKETYDQSELLRAKL 231
           S+ D+T+ +  Y  +  V   L F   KET   S  + A++
Sbjct: 45  SEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARI 85


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 592 PTDKNYLSVLWGKLASEILVQNWDGALD 675
           PTDKN + + +     ++ + NW    D
Sbjct: 587 PTDKNPVQLWYVPSLDQVWILNWRNQKD 614


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,572
Number of Sequences: 438
Number of extensions: 3888
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)