Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d15
         (676 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q94901 Cluster: RNA-binding protein lark; n=8; Endopter...    48   2e-04
UniRef50_Q7MY62 Cluster: Similarities with formyltransferase; n=...    35   1.6  
UniRef50_A5EWN6 Cluster: Ferrous iron transport protein FeoB; n=...    35   1.6  
UniRef50_UPI0000F31CBA Cluster: UPI0000F31CBA related cluster; n...    34   2.7  
UniRef50_Q92RD9 Cluster: Putative uncharacterized protein; n=4; ...    33   8.4  
UniRef50_Q23B08 Cluster: Protein kinase domain containing protei...    33   8.4  
UniRef50_Q20027 Cluster: Cholesterol 25-hydroxylase-like protein...    33   8.4  

>UniRef50_Q94901 Cluster: RNA-binding protein lark; n=8;
           Endopterygota|Rep: RNA-binding protein lark - Drosophila
           melanogaster (Fruit fly)
          Length = 352

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 43/112 (38%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
 Frame = +1

Query: 121 YDGYYDRSRFDSPRDLFERRYPVGGASRGLELGGSRGARGDFVSXXXXXXXXXXXXXXXX 300
           YD YYDR RF+  RDL+ERRY             SR    DF                  
Sbjct: 236 YD-YYDR-RFEDSRDLYERRYQT-----------SR--MRDFPPPPISRREPMPLPPTLS 280

Query: 301 XXSGMGSMRSSYDPMYSRRSPPPGPQMSRGM----------YEDFSRDTFDD 426
                 S+   YD M+SRRSPPP P+ S GM          YEDFSRD FD+
Sbjct: 281 GSLRSCSVSRGYDTMFSRRSPPP-PRSSNGMSRYGSPTPHGYEDFSRDAFDE 331


>UniRef50_Q7MY62 Cluster: Similarities with formyltransferase; n=1;
           Photorhabdus luminescens subsp. laumondii|Rep:
           Similarities with formyltransferase - Photorhabdus
           luminescens subsp. laumondii
          Length = 390

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 658 DIYFNYLHHKCSQLYSFIHKVKTLSNPFTHLQLSLH 551
           DIY NY+ H C+ +  +I K+   +N F++ Q S H
Sbjct: 148 DIYLNYISHSCTLIEDYIEKIIKNNNIFSNPQKSKH 183


>UniRef50_A5EWN6 Cluster: Ferrous iron transport protein FeoB; n=1;
           Dichelobacter nodosus VCS1703A|Rep: Ferrous iron
           transport protein FeoB - Dichelobacter nodosus (strain
           VCS1703A)
          Length = 832

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 24  VYCVGNSWSLFGVHIFNLCYILLFFV 101
           VYCVG  W+L GV +F+L Y +  F+
Sbjct: 783 VYCVGRFWALSGVQVFSLFYAVALFL 808


>UniRef50_UPI0000F31CBA Cluster: UPI0000F31CBA related cluster; n=2;
           Bos taurus|Rep: UPI0000F31CBA UniRef100 entry - Bos
           Taurus
          Length = 280

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 233 APLDPPNSSPRDAPPTG*RRSNKSRG 156
           AP  PP+S PRD+PP G  R+N  +G
Sbjct: 95  APRGPPHSGPRDSPPPGAPRTNPLQG 120


>UniRef50_Q92RD9 Cluster: Putative uncharacterized protein; n=4;
           Rhizobiaceae|Rep: Putative uncharacterized protein -
           Rhizobium meliloti (Sinorhizobium meliloti)
          Length = 128

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 200 HEGWNWADLEELAVTSFLRPYAANPCHPCL 289
           H GW+WA+ +++ ++  +R  +  P HP L
Sbjct: 26  HHGWSWAEADQVELSGTIREISMAPPHPTL 55


>UniRef50_Q23B08 Cluster: Protein kinase domain containing protein;
            n=1; Tetrahymena thermophila SB210|Rep: Protein kinase
            domain containing protein - Tetrahymena thermophila SB210
          Length = 2828

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
 Frame = -1

Query: 628  CSQLYSFIHKVKTLSNPFTHLQLSLH-YF*NVPKVQPKY-QMSF--STTILSYINK 473
            CS  Y   H+ + + +  TH+QL LH YF   P+++ KY Q +F   T +L++++K
Sbjct: 2480 CSYDYFIEHQDRLMLSGITHIQLDLHIYFSINPQLKSKYFQKTFLSLTILLTHLSK 2535


>UniRef50_Q20027 Cluster: Cholesterol 25-hydroxylase-like protein;
           n=2; Caenorhabditis|Rep: Cholesterol 25-hydroxylase-like
           protein - Caenorhabditis elegans
          Length = 300

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 676 AYEKTYDIYFNYLHHKCSQLYSFIHKVKTL-SNPFTHLQLSLHYF 545
           A++ TY  +F+Y++HK   LY + H V  + S+PF      LH F
Sbjct: 140 AFDFTY-FWFHYINHKVKWLYRWCHSVHHMYSSPFAASAQHLHPF 183


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,170,446
Number of Sequences: 1657284
Number of extensions: 13039341
Number of successful extensions: 39738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39702
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)