Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d15
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    27   2.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   5.7  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   7.6  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    25   10.0 
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    25   10.0 
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   10.0 

>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 3   FCSGVRHVYCVGNSWS 50
           FC G+  +YC+G+S++
Sbjct: 97  FCKGIYEIYCIGDSFT 112


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 49  VYLVFIFLTCVIYCYSLYIVTHDPYD 126
           +Y +FIF+  V++   L I + DP+D
Sbjct: 186 LYNIFIFVVIVLHAVLLMIRSDDPHD 211


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 648 LTIYITNAVNCTHSYIK*KHYQTLLHIYN*V---CIISKMFL 532
           LT Y T  + CTH Y   K Y+  L  +N +    I++K FL
Sbjct: 185 LTDYFTFKLECTHKY-NIKVYEACLQSFNALPLAAIMNKQFL 225


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 676 AYEKTYDIYFNYLHHKCSQLY 614
           AYE  +D  F+ L H+ S++Y
Sbjct: 798 AYESNFDGLFDSLEHEASEVY 818


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 7/26 (26%), Positives = 19/26 (73%)
 Frame = -2

Query: 663 LMIFILTIYITNAVNCTHSYIK*KHY 586
           + +F++   +++ V+C+ ++I+ KHY
Sbjct: 247 IKVFLVPYNVSSMVDCSKTWIRQKHY 272


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 676 AYEKTYDIYFNYLHHKCSQLYSFIHKVKTLSNP 578
           AY+    I  +YL  +C  L + I+++   +NP
Sbjct: 842 AYQALEQIRVHYLIRRCEALTNIINRISFRNNP 874


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,193
Number of Sequences: 5004
Number of extensions: 54309
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)