Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d15
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467...    30   1.5  
10_01_0230 - 2433082-2434674                                           29   3.4  
09_04_0188 - 15410310-15410514,15410597-15410748,15410845-154110...    29   4.5  
07_03_1507 - 27228032-27228742                                         28   7.8  

>09_04_0174 +
           15346123-15346207,15346350-15346502,15346623-15346759,
           15346856-15347005,15347405-15347506,15347832-15347996,
           15348402-15348499,15348704-15348827,15349056-15349145,
           15349555-15349599,15350438-15350833
          Length = 514

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +2

Query: 116 IHMTGTMIVHGSILHGTCSSDAIQLEEHHEGWNWADLEELAVTSFLRPYAANPCHPCLIY 295
           +H +G  ++H  IL        I+ +EH +G +W +L ++ +    +P   N  HP  +Y
Sbjct: 243 VHRSG--LIHRKILSEP-QKYLIKNDEHFDGNSWRELFDVVIAQANKPTFYNSDHPFRVY 299


>10_01_0230 - 2433082-2434674
          Length = 530

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 136 DRSRFDSPRDLFERRYPVGGASRGLELGGSRGAR 237
           D + +D PR+    R+  GG   G+++ G+R  R
Sbjct: 427 DGAAWDRPREFLPERFMAGGDGEGVDITGTREIR 460


>09_04_0188 -
           15410310-15410514,15410597-15410748,15410845-15411003,
           15411062-15411367,15412508-15412535,15413174-15413290,
           15413649-15413717,15413919-15414103
          Length = 406

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 429 SVIKSISAKIFIHSSGHLGSWWGASAAV 346
           +VI ++ A  F+H   H+GS +GA+A V
Sbjct: 320 TVIATVVAAAFLHEELHIGSLFGATAIV 347


>07_03_1507 - 27228032-27228742
          Length = 236

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 242 SPRAPLDPPNSSPRDAPPTG*RRS 171
           S RAPL PP+ S   +PPT  R S
Sbjct: 47  SRRAPLSPPSPSTFGSPPTSLRTS 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,580,786
Number of Sequences: 37544
Number of extensions: 369512
Number of successful extensions: 1357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)