Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d15
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34021| Best HMM Match : Zip (HMM E-Value=0)                         29   2.6  
SB_14097| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                29   2.6  
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39)          28   7.9  
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)                 28   7.9  

>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
          Length = 808

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 227 EELAVTSFLRPYAANPCHPCLIYLHCG 307
           E LA TS + P A  PCHP  +Y   G
Sbjct: 157 EHLAHTSGIFPIALTPCHPLDVYCDLG 183


>SB_14097| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 431

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 227 EELAVTSFLRPYAANPCHPCLIYLHCG 307
           E LA TS + P A  PCHP  +Y   G
Sbjct: 225 EHLAHTSGIFPIALTPCHPLDVYCDLG 251


>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +3

Query: 3   FCSGV--RHVYCVGNSWSLFGVHIFNLCYILLFFVHSNP 113
           F SG+   H+      W +  +H+ N  Y+L F   S P
Sbjct: 196 FSSGIYIHHLGYKATFWGILSLHLINFIYLLFFLPESMP 234


>SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39)
          Length = 411

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 227 EELAVTSFLRPYAANPCHPCLIYLHCG 307
           E  A TS + P A  PCHP  +Y   G
Sbjct: 287 EHFAHTSGIFPIALTPCHPLDVYCDLG 313


>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 118 PYDGYYDRSRFDSPRDLFERRYPVGGASRGLELGGSRGARGDFV 249
           PY      ++FD  +  F ++YP+G    G+   G  G  G  V
Sbjct: 562 PYLRVERPNKFDQQKAYFSQQYPMGSDPNGMAARGFGGLPGSMV 605


>SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)
          Length = 419

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 251 ETKSPRAPLDPPNSSPRDAPPTG*RRSNKSRGESNRERS*YP 126
           ++    +P  PP  S + +PPT       SRG+SN++ S  P
Sbjct: 329 QSNKQSSPTPPPRQSDKQSPPT------PSRGQSNKQSSPTP 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,065,123
Number of Sequences: 59808
Number of extensions: 416889
Number of successful extensions: 1154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)