Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d15
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    33   0.25 
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    31   0.99 
AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical ...    30   1.3  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AL032625-2|CAB63351.1|  138|Caenorhabditis elegans Hypothetical ...    29   4.0  
AL032654-7|CAA21719.1|  219|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical pr...    28   7.0  
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    28   7.0  
AF022985-5|AAB69974.1|  299|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    27   9.2  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    27   9.2  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    27   9.2  

>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 676 AYEKTYDIYFNYLHHKCSQLYSFIHKVKTL-SNPFTHLQLSLHYF 545
           A++ TY  +F+Y++HK   LY + H V  + S+PF      LH F
Sbjct: 140 AFDFTY-FWFHYINHKVKWLYRWCHSVHHMYSSPFAASAQHLHPF 183


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 131 TMIVHGSILHGTCSSDAIQLEEHHEGWNWADLEE 232
           T+ VHG I+H  C+SDA +  ++   +N +D+++
Sbjct: 785 TVNVHGKIVHSACASDAARSLDNSSFFNDSDIKK 818


>AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.3 protein.
          Length = 347

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +1

Query: 55  LVFIFLTCVIYCYSLYIVTHD 117
           L+F F++C ++ Y++Y+V H+
Sbjct: 104 LIFFFISCTMFLYAVYLVKHE 124


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +2

Query: 110 PMIHMTGTMIVHGSILHGTCSSDAIQLEEHHEGWNWADLEELAVTSFL-RPYAA-NPCHP 283
           P +HM  TM  +            +Q E  +   N  +L  +  T+ + RPY A NP  P
Sbjct: 494 PHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPD-NEPELHRIVTTAMMHRPYGAQNPHSP 552

Query: 284 CLIYLHCGAEW 316
           C++  HC   +
Sbjct: 553 CMVDGHCSKRY 563


>Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical
           protein ZK262.6 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 661 YDIYFNYLHHKCSQLYSFIHKVKTLSNPFTHLQLSLHY 548
           +D+YFN +   CS L+S +     L++   +L +S +Y
Sbjct: 271 FDMYFNLILAYCSNLFSALFCANALAHFLINLSMSRNY 308


>AL032625-2|CAB63351.1|  138|Caenorhabditis elegans Hypothetical
           protein Y37H9A.6 protein.
          Length = 138

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 176 DAIQLEEHHEGWNWADLEE 232
           D +QL   H+ W W +LE+
Sbjct: 96  DDVQLSHEHQNWKWCELED 114


>AL032654-7|CAA21719.1|  219|Caenorhabditis elegans Hypothetical
           protein Y52B11A.5 protein.
          Length = 219

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 366 WGASAAVHRIIGRSHGTHSAPQWR*IRHG 280
           WG  + VH+ +  S  TH  P+W  I HG
Sbjct: 167 WGVQSCVHQFVFPSGSTH--PRWPGIPHG 193


>Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical
           protein C45B11.4 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 25  YTA*VIRGVYL--VFIFLTCVIYCYSLYIVTHDPYDGYYDRSRF 150
           +T  ++ G+++   F FL C+ Y Y    +T  P    Y R+ F
Sbjct: 215 FTTIIVIGIFIQVAFFFLCCLYYIYFSTTITLSPKTKKYQRTFF 258


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 2 protein.
          Length = 1274

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 24  VYCVGNSWSLFGVHIFNLCYILLFFV 101
           V+C    +SLFGVH  +   ++LFFV
Sbjct: 638 VWCSIGMFSLFGVHATDNAIVVLFFV 663


>AF022985-5|AAB69974.1|  299|Caenorhabditis elegans Hypothetical
           protein T15B7.8 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 601 KVKTLSNPFTHLQLSLHYF*NVPKVQPKYQMSFSTTILSY 482
           K KT++  F  L + L Y  NVPK  PK+     T +L Y
Sbjct: 232 KTKTITTSFQPLSI-LWYGSNVPKGVPKHTNGNETLVLCY 270


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 239 PRAPLDPPNSSPRDAPPTG 183
           PRA   PP   PR +PPTG
Sbjct: 292 PRAGSPPPPPPPRGSPPTG 310


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 239 PRAPLDPPNSSPRDAPPTG 183
           PRA   PP   PR +PPTG
Sbjct: 313 PRAGSPPPPPPPRGSPPTG 331


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 239 PRAPLDPPNSSPRDAPPTG 183
           PRA   PP   PR +PPTG
Sbjct: 298 PRAGSPPPPPPPRGSPPTG 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,091,555
Number of Sequences: 27780
Number of extensions: 313781
Number of successful extensions: 1069
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)