Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4d09
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces... 157 1e-39
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe... 157 1e-39
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb... 157 1e-39
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 49 7e-07
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 28 1.4
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 27 3.3
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 27 3.3
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 5.7
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 7.5
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 7.5
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 25 7.5
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 7.5
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 7.5
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 25 9.9
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S... 25 9.9
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 9.9
>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 157 bits (382), Expect = 1e-39
Identities = 73/82 (89%), Positives = 80/82 (97%)
Frame = +3
Query: 147 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 326
+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81
Query: 327 VTAMDVVYALKRQGRTLYGFGG 392
VT++DVVY+LKRQGRT+YGFGG
Sbjct: 82 VTSLDVVYSLKRQGRTIYGFGG 103
>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 157 bits (382), Expect = 1e-39
Identities = 73/82 (89%), Positives = 80/82 (97%)
Frame = +3
Query: 147 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 326
+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81
Query: 327 VTAMDVVYALKRQGRTLYGFGG 392
VT++DVVY+LKRQGRT+YGFGG
Sbjct: 82 VTSLDVVYSLKRQGRTIYGFGG 103
>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 157 bits (382), Expect = 1e-39
Identities = 73/82 (89%), Positives = 80/82 (97%)
Frame = +3
Query: 147 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 326
+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81
Query: 327 VTAMDVVYALKRQGRTLYGFGG 392
VT++DVVY+LKRQGRT+YGFGG
Sbjct: 82 VTSLDVVYSLKRQGRTIYGFGG 103
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 48.8 bits (111), Expect = 7e-07
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +3
Query: 186 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 365
IR+LA K+I+G + EE ++F + + D + +HA RKT+ DVV +KRQ
Sbjct: 391 IRKLANSYSQKKIAGSVIEELTTASELFFKQIANDLSAFADHAHRKTIDTQDVVLLMKRQ 450
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 555 LKHVSRWSTSCVACLLSPLLSVVSHCSVV 469
++H++RW +S + L SPLLS SH V+
Sbjct: 1779 IQHLARWISSSKSYLYSPLLS--SHVEVI 1805
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 206 RWSETYLRSYIRRDPRRSQSVPRKRDPR 289
+++ +R++IR D RS+ +K DPR
Sbjct: 273 KYASQIMRAFIRIDFERSKKTKKKHDPR 300
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 570 DSKKFLKHVSRWSTSCVACLLSPLLSVVS 484
+SKK+L+ S W S +A + S L +VV+
Sbjct: 159 ESKKYLQKQSNWDISVIAPICSALGTVVA 187
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 5.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 234 IYEETRGVLKVFLEN-VIRDAVTYTEHAKRKTVTAMDVVYALKRQG 368
I +ET VL E+ I D+ T T+ KRK V ++Y R+G
Sbjct: 132 ITDETPKVLSEIKEHGTISDSKTLTDLKKRKLVERNKIMYFSLRKG 177
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 7.5
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +1
Query: 394 KEVSSTIFYFYFLSRERFNFFFNYTDNRA 480
KE++ T++Y+YF + N+ ++A
Sbjct: 53 KEIADTVWYYYFDVEKSVNYLLQKASSKA 81
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 247 PAAFSKCSSKT*SATLSHTPNTPRGRPSPL 336
P+AF+K ++ S LS NT RP+ L
Sbjct: 539 PSAFTKAGNEALSVPLSGARNTAASRPTNL 568
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 237 YEETRGVLKVFLENVIRDAVTYTEHAKRKT-VTAMDVVY 350
+ E R LK EN+IR+ Y E A + T T +D +
Sbjct: 46 FAERRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAF 84
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 170 HHETGYPSFGSQRWSETYLRSYIRRDPRRSQSVPRKRDPRRCHIHRTRQEEDRHRYGCCV 349
HHE FG+ ET + I+++ + S+ +P + R R+ C V
Sbjct: 585 HHEFDIADFGNAYKEETIPQFRIKKEAKFSEFIPIVAEKLGYPQECMRFWYVVKRHNCTV 644
Query: 350 RSETP 364
R E+P
Sbjct: 645 RVESP 649
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 28 ALKSAATTNTKHKPRSSSR*PVAVKEA 108
A+ + T+N H P SSS P+ +K A
Sbjct: 123 AVSPSDTSNLLHPPTSSSSIPIPIKNA 149
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -1
Query: 588 LIYNINDSKKFLKHVSRWSTSCVACLLSPLLSVVSH 481
L+ N +SK +S +++C++ L+SP LS++SH
Sbjct: 496 LLNNSPNSKSGSTQLS--ASTCLSDLISPQLSILSH 529
>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 116
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 267 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 368
F+ V +A KRKT+T DV+ AL G
Sbjct: 46 FISFVTGEASEQCTQEKRKTITGEDVLLALNTLG 79
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 382 PYRVRPWRFRAYTTSIAVTVFLLACSVYVTASRITFS 272
P++ P RAY A FL CS+ A I FS
Sbjct: 862 PFKNTPKISRAYLRLTASKYFLKLCSIPFYAEHIDFS 898
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,078
Number of Sequences: 5004
Number of extensions: 48784
Number of successful extensions: 164
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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