Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4d08
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0210 - 15874289-15875663,15878248-15879263 28 3.6
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 28 3.6
02_04_0069 - 19450322-19450348,19451247-19451319,19451535-194517... 27 4.8
01_06_0784 + 31979670-31979976,31980092-31980337,31980428-319805... 27 4.8
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 27 6.3
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204... 27 8.3
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22... 27 8.3
04_03_0301 + 14094370-14094584,14096694-14096727,14098084-140980... 27 8.3
01_06_1608 - 38612754-38616947,38617030-38617095 27 8.3
>10_08_0210 - 15874289-15875663,15878248-15879263
Length = 796
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 96 RPHDVGRPWSPHEVPLHVLSEGRSVPI*ILPP 191
RP D PW PH + LS+ + + ++PP
Sbjct: 601 RPSDADNPWRPHYLVSRTLSQYCAYLLWLVPP 632
>03_03_0186 +
15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 274 SPENVSKWAEIRRKEAAE 327
+PE + KW +I+RKEA E
Sbjct: 225 NPELIKKWTKIKRKEAKE 242
>02_04_0069 -
19450322-19450348,19451247-19451319,19451535-19451790,
19451808-19452057
Length = 201
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 185 TSRICGSGVTGLPPS*FPHHSSTKFTKCQTPLKM*ASGLKSEGKKLPNTTKC 340
T+++C S G+ S FP + K T+ + ASG+ + G K+ C
Sbjct: 30 TTKVCASRGEGIVGSSFPRPNMVKETRSGNVDHLYASGVAAMGAKVAQVWLC 81
>01_06_0784 +
31979670-31979976,31980092-31980337,31980428-31980544,
31980638-31980792,31980910-31980984,31981080-31981346,
31981436-31981756,31981858-31982271
Length = 633
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 261 VNFVEEW*GNYDGGSPVTPEPQILE 187
++F+++W G+ D SP PEP E
Sbjct: 576 LDFMDDWNGDADRPSPTAPEPAAQE 600
>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 239 HHSSTKFTKCQTPLKM*ASGLKSEGKKLPNTTKCS 343
H +TK T C P+K AS + + K T CS
Sbjct: 962 HEKTTKRTTCALPVKEKASSPEGQHKNTIKRTTCS 996
>11_06_0223 -
21419128-21419397,21419493-21419747,21420243-21420414,
21420530-21420757,21420916-21421049,21421309-21421392,
21421554-21421760,21421871-21422203,21422343-21422449,
21422823-21422988,21423127-21423230,21423347-21423507,
21423595-21424495,21424642-21424732,21424837-21425127,
21425491-21425575,21425665-21425747,21427653-21427773,
21427785-21428260
Length = 1422
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 199 WLWRYWAAAIVISSPLFYKIHKMSNSPENVSKWA 300
W+W YWA SP+ Y +S + S+WA
Sbjct: 743 WIWGYWA------SPMMYSQQAISINEFLASRWA 770
>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
225296-225356,225666-226918
Length = 1891
Score = 26.6 bits (56), Expect = 8.3
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 100 LTMSDA-PGRPMKFPYTFSAKVAQFPYKFYLQNLWLWRYWAAAIVISSPLFYKIHKMSNS 276
+TMSD G+ Y A V F Y L + + WAA+I + PL + N
Sbjct: 1176 ITMSDLLAGKSSLEDYRGIAFVGGFSYADVLDSA---KGWAASIRFNQPLIQQFQNFYNR 1232
Query: 277 PENVS 291
P+ S
Sbjct: 1233 PDTFS 1237
>04_03_0301 +
14094370-14094584,14096694-14096727,14098084-14098095,
14098400-14098574,14099064-14099299,14099396-14100457
Length = 577
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 277 GSLTFCEFCRRVVRKLRWRQPSNARATN 194
G L FC F RR+++ +PS+ TN
Sbjct: 92 GVLNFCNFMRRILKSFVMVKPSSLVQTN 119
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 26.6 bits (56), Expect = 8.3
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 100 LTMSDA-PGRPMKFPYTFSAKVAQFPYKFYLQNLWLWRYWAAAIVISSPLFYKIHKMSNS 276
+TMSD G+ Y A V F Y L + + WAA+I + PL + N
Sbjct: 1180 ITMSDLLAGKSSLEEYRGIAFVGGFSYADVLDSA---KGWAASIRFNQPLIQQFQNFYNR 1236
Query: 277 PENVS 291
P+ S
Sbjct: 1237 PDTFS 1241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,501,927
Number of Sequences: 37544
Number of extensions: 243429
Number of successful extensions: 665
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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