Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d08
         (427 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25416| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)              28   2.8  
SB_45959| Best HMM Match : DUF1091 (HMM E-Value=3.6)                   27   6.5  
SB_20171| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_57915| Best HMM Match : Dynein_heavy (HMM E-Value=1.8)              27   8.6  

>SB_25416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 14  DFDQTSLRKLKRLSQIIKCFQSFLHLL 94
           DFD + LR+L  +  I   FQS LHLL
Sbjct: 71  DFDWSPLRELSSIDDIANTFQSTLHLL 97


>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
          Length = 479

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +1

Query: 118 PGRPMKFPYTFSAKVAQFPYKFYLQNLWLWRYWAAAIVISSP 243
           PG P   P+  + K +   + F     W W Y+ A+  +  P
Sbjct: 183 PGMPAAQPFVHAFKESNAAWNFCPAGKWSWEYYDASAEVPPP 224


>SB_45959| Best HMM Match : DUF1091 (HMM E-Value=3.6)
          Length = 360

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/78 (21%), Positives = 33/78 (42%)
 Frame = +1

Query: 79  FSSFTYALTMSDAPGRPMKFPYTFSAKVAQFPYKFYLQNLWLWRYWAAAIVISSPLFYKI 258
           FSS T A  +S++P + +K P+ +S  +          +  LW+Y     V    L  ++
Sbjct: 22  FSSATDAFLISNSPEQLVKSPWKYSLPLYVVSVSLECNSPHLWKYVDDTTVSEVVLKGEL 81

Query: 259 HKMSNSPENVSKWAEIRR 312
                   ++ +W+   R
Sbjct: 82  SSAQGLVNDIIEWSHDNR 99


>SB_20171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 234 NYDGGSPVTPEPQILEVKFIWELSDL 157
           N D  +P TPE Q   ++++ ELSD+
Sbjct: 87  NVDLATPRTPEKQDRTIRYVHELSDI 112


>SB_57915| Best HMM Match : Dynein_heavy (HMM E-Value=1.8)
          Length = 185

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 246 EW*GNYDGGSPVTPEPQILEVKFIWELSDL 157
           +W   Y GG P+TP P+++   +I ++  L
Sbjct: 4   DWYLEYIGGLPLTPHPELMLTFYILQIFGL 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,040,446
Number of Sequences: 59808
Number of extensions: 263257
Number of successful extensions: 582
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)