Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d08
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical pr...    27   5.6  
L08403-7|AAA28019.2|  309|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical pr...    26   9.8  
U41273-3|AAA82455.2|  257|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical
           protein F31E8.5 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +1

Query: 208 RYWAA---AIVISSPLFYKIHKMSNSPEN 285
           +YWA      +I   L  K+H +S SPEN
Sbjct: 139 KYWARNRLEFIIDDQLISKVHVLSKSPEN 167


>L08403-7|AAA28019.2|  309|Caenorhabditis elegans Hypothetical
           protein F42H10.9 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 220 QPSNARATNSGGKIYMGTERPSLRTCKGTSWGDQGRPT 107
           QP   R  N+   + + ++ PS R     SW D+ RPT
Sbjct: 193 QPQLRRKANTTNIVDVSSQVPSARNAIYGSWQDRHRPT 230


>Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical
           protein F18H3.3b protein.
          Length = 566

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 67  VFSIFSSFTYALTMSDAPGRPMKFPY 144
           +FS F   T A+ M+DA G+P  F +
Sbjct: 257 MFSKFGEITSAVVMTDAQGKPKGFGF 282


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 67  VFSIFSSFTYALTMSDAPGRPMKFPY 144
           +FS F   T A+ M+DA G+P  F +
Sbjct: 257 MFSKFGEITSAVVMTDAQGKPKGFGF 282


>AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical
           protein C24D10.4 protein.
          Length = 233

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 109 SDAPGRPMKFPYTFSAKVAQF 171
           S+ PG P +FP  F A +AQF
Sbjct: 79  SEFPGFPSEFPAGFPADIAQF 99


>Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical
           protein M01G12.9 protein.
          Length = 272

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 178 KFYLQNLWLWRYWAAAIVISSPLFY--KIHKMSNSPENVSKWAEIRRKE 318
           K++L+N   W YW +     + L    +  K    P+ ++K  E +R+E
Sbjct: 207 KYHLENSSCWFYWQSVFGNCNTLIVGSRTGKQDQDPKTLTKTRERQREE 255


>U41273-3|AAA82455.2|  257|Caenorhabditis elegans Hypothetical
           protein C26B9.3 protein.
          Length = 257

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 301 QPTCLHFQGSLTFCEFCRRV 242
           Q  C   +GS  FC+FC+++
Sbjct: 117 QCPCAKLEGSCVFCDFCKQL 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,944,958
Number of Sequences: 27780
Number of extensions: 208313
Number of successful extensions: 513
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)