Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d04
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    25   0.63 
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    23   2.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.9  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 491 FFSSCCLIAGSYLPVHST*GITSSK 417
           FFS CC++   YL    T  +T+SK
Sbjct: 12  FFSFCCILFFIYLYWQQTSNLTTSK 36


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 294 AVWSRGR*SRPRLAVRIFVFFIHVSAYSVFT 202
           A+W+R R +  +   R++ F +H+S   + T
Sbjct: 59  ALWTRRRYAGRKKLSRMYFFILHLSIADLIT 89


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -1

Query: 593 SCFLKSSSVFCATTACSAFVCSVNVAISLVTNCLFFSSCCLI 468
           +CF ++ +  C T  C    C  N+ +  V        CC I
Sbjct: 695 TCFCENGNNKCFTMECPQVTCPDNMKLEKVP-----GECCAI 731


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,817
Number of Sequences: 336
Number of extensions: 3654
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)