Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d02
         (440 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25412| Best HMM Match : rve (HMM E-Value=1.6e-05)                   29   2.2  
SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_4156| Best HMM Match : Ets (HMM E-Value=0)                          27   6.9  

>SB_25412| Best HMM Match : rve (HMM E-Value=1.6e-05)
          Length = 508

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 30  CVSSKPNHFCCINFC*QISCKHEFGRAILSVGQPRKGGIHPVEI 161
           C++S+PNH C    C Q++ ++     +L+V       +H +++
Sbjct: 442 CLNSEPNHPCGHGCCQQLAYRYSVNSGLLTVTNEGYAVLHTLKL 485


>SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 18  SISNCVSSKPNHFCCIN 68
           ++ +C  + P HFCCIN
Sbjct: 398 NVKDCHGNTPLHFCCIN 414


>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
          Length = 516

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 166 LNDDITSEPQQFSEPVYKMPIDDMMVGY 249
           LN  ITS+ Q  ++  YK P  D   G+
Sbjct: 444 LNQPITSDAQAHAQAAYKFPGSDFYAGF 471


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,740,518
Number of Sequences: 59808
Number of extensions: 187502
Number of successful extensions: 468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)