Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d01
         (737 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    26   0.37 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    26   0.37 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      24   1.5  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    23   3.4  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   4.5  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   4.5  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   5.9  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 320 HHEDEHVGRHRCYGQPHSSYCHR*RDRH*MRPSQS*QNQ 436
           HH+  H  +H  YG    +  H+    H   P Q   NQ
Sbjct: 178 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQ 216


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 320 HHEDEHVGRHRCYGQPHSSYCHR*RDRH*MRPSQS*QNQ 436
           HH+  H  +H  YG    +  H+    H   P Q   NQ
Sbjct: 180 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQ 218


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 600 SVFGLLVPVAAEAGYGWL 653
           S +G+L  +A EAG+ W+
Sbjct: 68  SKYGMLARLAVEAGFDWV 85


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
          (isoform B) protein.
          Length = 96

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 14 SASVPSRATLAMSPLGRFSTPDVG 85
          S+ V S + L MSP    ++ D+G
Sbjct: 15 SSEVTSSSALVMSPANSLASTDIG 38


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 115 ASDAL*YLVRFRILHALSP-SPWCPRLKEPACSF 213
           A + L   VR R  H+  P  P CP + EP+C +
Sbjct: 11  AGEVLDLCVRKRP-HSPEPYPPRCPPIYEPSCQY 43


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 359 HSNDGDRHVRPHDVSVCHSE 300
           HSND + H + H  ++ H E
Sbjct: 307 HSNDLNMHQQHHQQNMSHEE 326


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 629 GDRH*QTEHRVYQHTHSEEQAS 564
           G    Q+ HR+Y H  S  + S
Sbjct: 91  GHEEAQSPHRIYMHPESPSKGS 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,368
Number of Sequences: 336
Number of extensions: 4013
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)