Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4d01
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 42 9e-05
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 36 0.008
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 35 0.014
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 34 0.018
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 31 0.17
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 31 0.23
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 30 0.30
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 30 0.30
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 29 0.52
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 29 0.91
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 28 1.6
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 28 1.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.1
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 27 2.8
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 6.4
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 26 6.4
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 25 8.5
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 8.5
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 8.5
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 41.9 bits (94), Expect = 9e-05
Identities = 25/83 (30%), Positives = 40/83 (48%)
Frame = +3
Query: 453 DGDYAWDSSLQGYILSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAA 632
D D + ++S F+ +V+ PF L KRFGA L ML S + + AA
Sbjct: 88 DKDLGFVGDQYNIMISIFYIPFVLCAFPFSYLYKRFGAARILPFFML--SFGAMSLCQAA 145
Query: 633 EAGYGWLIVVRFIQGLGEGPIVP 701
+G ++ VR+ G+ E ++P
Sbjct: 146 VKNFGGMMAVRWFLGMAESAVLP 168
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 35.5 bits (78), Expect = 0.008
Identities = 22/92 (23%), Positives = 44/92 (47%)
Frame = +3
Query: 426 NKTSVVSTQDGDYAWDSSLQGYILSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSV 605
N +V+ D + + + ++F+ GY++ + P +L +RF L V ++I
Sbjct: 83 NSYAVIMGLKEDLKMEGQMYSWSGTAFYLGYLVFEFPASLLLQRFPLSKTLCVFLVI--- 139
Query: 606 FGLLVPVAAEAGYGWLIVVRFIQGLGEGPIVP 701
+G L+ + + A Y I +R + G+ E P
Sbjct: 140 WGFLLCMTSVANYPGFIALRVLLGMMESAASP 171
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 34.7 bits (76), Expect = 0.014
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +3
Query: 504 FFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQGLG 683
F+ G+VI QIP +L +RF F+ + ++ ++ A + L+ +RF GL
Sbjct: 133 FYVGFVIGQIPGHMLLQRFPVSKFVAASTALWTI--IIFLHCAAYNFSGLMALRFFLGLV 190
Query: 684 EGPIVPCTHAML 719
E ++P A +
Sbjct: 191 ESSLLPTMEATI 202
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 34.3 bits (75), Expect = 0.018
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +3
Query: 504 FFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQGLG 683
F+ GY++ Q P + + F F+G+ SV L A YG LI +RF G
Sbjct: 146 FYVGYIVGQFPGHYIMQTFPLGKFVGLVTFSWSVIVFLHCCAYN--YGGLIALRFFLGFT 203
Query: 684 EGPIVPCTHAML 719
E ++P A +
Sbjct: 204 ESCLLPAMEATM 215
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 31.1 bits (67), Expect = 0.17
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 504 FFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVA-AEAGYGWLIVVRFIQGL 680
F GY+I Q+P +R ARL+ V +N ++GL+ + A L+++RF +
Sbjct: 76 FTCGYIIGQLPGSYALQRVPARLWFSV---MNILWGLMTIFSFAVHSVRALMILRFFMAV 132
Query: 681 GEGPIVPCTHAML 719
E TH +L
Sbjct: 133 AEASTFAGTHYIL 145
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 30.7 bits (66), Expect = 0.23
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 531 IPF-GILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQGLGEGPIV 698
+PF GI+S+ G ++ L +++ +FG + AA+ WL++ R +QG+G G I+
Sbjct: 142 LPFCGIMSEVVGRKIVLYTSIVL-FLFGSAMCGAAQ-NMLWLVLCRAVQGIGGGGIM 196
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 30.3 bits (65), Expect = 0.30
Identities = 32/136 (23%), Positives = 56/136 (41%)
Frame = +3
Query: 321 IMRTNMSVAIVAMVNHTALTVIAEEIDTECGPVNPNKTSVVSTQDGDYAWDSSLQGYILS 500
I NM + + A++ LT+ +D N T+ + T D+ D+S +I S
Sbjct: 90 IPENNMKIVVPALI----LTLFLAALD------NTIVTTALPTIAEDFN-DTSSSSWIGS 138
Query: 501 SFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQGL 680
++ G+ G ++ L + + + L A WLIV R IQGL
Sbjct: 139 AYVLASNAVLPAVGVFCNILGRKIVLYICIFFFMLGSALC--GASQNMIWLIVCRAIQGL 196
Query: 681 GEGPIVPCTHAMLXQV 728
G G I+ + ++ +
Sbjct: 197 GGGGIISLVNIIISDI 212
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 30.3 bits (65), Expect = 0.30
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 531 IPF-GILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQGLGEGPI 695
+PF GI+S+ G ++ L +++ +FG + AA+ WL++ R +QG+G G I
Sbjct: 142 LPFCGIMSEVVGRKIVLYTSIVL-FLFGSAMCGAAQ-NMLWLVLCRAVQGIGGGGI 195
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 29.5 bits (63), Expect = 0.52
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Frame = +3
Query: 507 FYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGW----------LI 656
+ G ++ Q+ FG S RFG + GM+ ++ ++ YG+ LI
Sbjct: 125 YVGTIVGQLSFGWYSDRFGRKN----GMITATIILIVSTALCTGAYGYKGSINGMLSALI 180
Query: 657 VVRFIQGLGEGPIVPC 704
RF G+G G PC
Sbjct: 181 AYRFFLGIGIGAEYPC 196
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 28.7 bits (61), Expect = 0.91
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +3
Query: 495 LSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQ 674
+S F GY + I + +S+ G + L +G+ + SVF + V A + +++ RF
Sbjct: 180 VSLFMLGYCLGPICWAPMSEITGRKTPLYIGLFLFSVFQIAVATAQD--IQTIMICRFFG 237
Query: 675 GLG 683
G G
Sbjct: 238 GYG 240
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3
Query: 495 LSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQ 674
++ F GY+ I + LS+ G +L L +GM +F + V VA + +++ RF
Sbjct: 176 MTVFLCGYIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAKD--IQTIMMCRFFS 233
Query: 675 G 677
G
Sbjct: 234 G 234
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +3
Query: 495 LSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQ 674
+S + G+ I + +S+ G ++ L VGM + S+F + V VA + +++ RF
Sbjct: 139 MSLYVCGFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAKDV--QTVMICRFFS 196
Query: 675 G 677
G
Sbjct: 197 G 197
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 269 NSALGYVHAVSRNGKRLHHEDEHVG 343
NS+LGY +++R+ K + + EH+G
Sbjct: 92 NSSLGYAPSITRSIKSISNNTEHLG 116
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 697 TMGPSPSPCMNLTTMSHPYPASAATGTSRPNTEFISIPTPRN 572
T P P+P L + P P + A P++E S+ TPR+
Sbjct: 1215 TAPPVPTPSAGLPPV--PVPTAKAPPVPAPSSEAPSVSTPRS 1254
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 27.1 bits (57), Expect = 2.8
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 716 HSVSARHDGPLSQPLYEPDDDEPSVPSFGGDRH*QTEHRVYQHTHSEE-QASPEP 555
H V R PLS P +P D S P GG +H+V Q + +E +PEP
Sbjct: 204 HGVLHRLPAPLSGPPPQPGDIVFSNPMLGG-----PDHKVSQPSETENFLPTPEP 253
>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 435 SVVSTQDGDYAWDSSLQGYILSSF 506
S V+TQD D W SS+ Y L+ F
Sbjct: 159 SGVATQDLDVQWVSSISWYFLNLF 182
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 8 PQSASVPSRATLAMSPLGRFSTPDVGPLTNIT*VAARRTL 127
P++A+ S T GRFS G + NIT +AA TL
Sbjct: 150 PKNANSSSTCTRTPPTSGRFSIRHDGQVCNIT-IAAEETL 188
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 228 VQVVPKRARGLLES--WTPW*RGKRVKNPKSN*IL*SVRRAATYVMLVSGPTSGVEKRPR 55
+Q V K+A G+ ES T + K + S S +A +++ GP G++ RP+
Sbjct: 715 LQRVAKKAEGISESGDMTESEKAKEISRLVSR-ATKSKPKAKPTLVVAKGPNKGLKSRPK 773
Query: 54 G 52
G
Sbjct: 774 G 774
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 713 SVSARHDGPLSQPLYEPDDDEPSVPS 636
+ ++ PLS PL++P + S+PS
Sbjct: 246 NAQSQSGNPLSNPLFQPSNVPQSIPS 271
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 269 NSALGYVHAVSRNGKRLHHEDEHVGRHRCYGQPHSSYCH 385
+S + + S NG L H+ E + + Y + H +YCH
Sbjct: 12 SSLVSSKNMTSENG--LEHQFEELLVEKQYSEEHCAYCH 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,218
Number of Sequences: 5004
Number of extensions: 67259
Number of successful extensions: 234
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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