Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4d01
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 78 6e-15
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 71 1e-12
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069... 57 1e-08
11_01_0557 + 4394754-4396040 55 5e-08
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 53 2e-07
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 49 3e-06
01_01_1224 - 9888726-9888820,9889042-9889085,9889194-9889282,988... 35 0.078
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 34 0.10
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106 32 0.55
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 31 0.72
05_03_0294 + 11818391-11820268,11820332-11820550,11820752-118216... 31 0.72
05_03_0227 + 10655204-10655269,10656333-10656393,10656570-106566... 31 1.3
05_03_0458 + 14280953-14281866,14281964-14282912 30 1.7
08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624 29 5.1
03_06_0096 - 31627332-31627570,31628467-31628743,31628963-316291... 29 5.1
07_03_1293 - 25563431-25563545,25564078-25564196,25564300-255644... 28 6.7
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 28 6.7
06_03_0419 - 20583812-20584123,20585911-20586006,20586195-205862... 28 6.7
08_02_0797 + 21307534-21307639,21307907-21308988,21309385-213094... 28 8.9
05_07_0219 - 28474661-28475146,28475979-28476644 28 8.9
04_03_0438 + 15929220-15929453,15929564-15929764,15930874-159310... 28 8.9
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 78.2 bits (184), Expect = 6e-15
Identities = 37/104 (35%), Positives = 61/104 (58%)
Frame = +3
Query: 408 CGPVNPNKTSVVSTQDGDYAWDSSLQGYILSSFFYGYVITQIPFGILSKRFGARLFLGVG 587
C N + + ++ W + G I SSFF+GY++TQI GI + RFG ++ LG G
Sbjct: 195 CNMDRVNMSIAILPMSSEFGWSPATVGLIQSSFFWGYLLTQILGGIWADRFGGKVVLGFG 254
Query: 588 MLINSVFGLLVPVAAEAGYGWLIVVRFIQGLGEGPIVPCTHAML 719
++ S+ +L P+AA+ G +L+V+R G+GEG +P + +L
Sbjct: 255 VVWWSIATVLTPLAAKIGLPFLLVMRAFMGIGEGVAMPAMNNIL 298
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 70.9 bits (166), Expect = 1e-12
Identities = 35/104 (33%), Positives = 55/104 (52%)
Frame = +3
Query: 408 CGPVNPNKTSVVSTQDGDYAWDSSLQGYILSSFFYGYVITQIPFGILSKRFGARLFLGVG 587
C N + + ++ W+ G I SSFF+GY++TQI GI + G + LG G
Sbjct: 133 CNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIAGGIWADTVGGKTVLGFG 192
Query: 588 MLINSVFGLLVPVAAEAGYGWLIVVRFIQGLGEGPIVPCTHAML 719
++ S+ L P AA+ G +L+V R G+GEG +P + +L
Sbjct: 193 VIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNIL 236
>09_06_0242 -
21806370-21806483,21806574-21806660,21806865-21806917,
21806999-21807140,21807406-21807501,21808617-21808785,
21808859-21808939,21809032-21809106,21810322-21810387,
21811013-21811158,21811898-21812344
Length = 491
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/75 (34%), Positives = 41/75 (54%)
Frame = +3
Query: 408 CGPVNPNKTSVVSTQDGDYAWDSSLQGYILSSFFYGYVITQIPFGILSKRFGARLFLGVG 587
C N + + Y W+SS G + SSFF+GY ++Q+P G L+K FG R L +G
Sbjct: 145 CNMDKVNLSVAIIPMSHQYGWNSSTAGLVQSSFFWGYALSQLPGGWLAKLFGGRRVLEIG 204
Query: 588 MLINSVFGLLVPVAA 632
++ S+ ++P A
Sbjct: 205 VVAWSLATAIIPAVA 219
>11_01_0557 + 4394754-4396040
Length = 428
Score = 55.2 bits (127), Expect = 5e-08
Identities = 30/81 (37%), Positives = 47/81 (58%)
Frame = +3
Query: 483 QGYILSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVV 662
+G ILS F+YGYV++QIP G ++R G RL L + ++ S +VP+ L++
Sbjct: 45 KGMILSMFYYGYVLSQIPGGWAAQRLGGRLVLLLSFVLWSSICAVVPLDPNRVI-LLVLS 103
Query: 663 RFIQGLGEGPIVPCTHAMLXQ 725
R + G+ +G I P H +L Q
Sbjct: 104 RLLVGVAQGLIFPSIHTVLAQ 124
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/86 (32%), Positives = 41/86 (47%)
Frame = +3
Query: 462 YAWDSSLQGYILSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAG 641
Y W SS G + SSF +GYV + + G L+ R+G + + + S+ L P AA
Sbjct: 154 YGWSSSFLGIVQSSFLWGYVFSSMVGGALADRYGGKKVMAGAAALWSLATFLTPWAASQS 213
Query: 642 YGWLIVVRFIQGLGEGPIVPCTHAML 719
L+ +R + GL EG P L
Sbjct: 214 TIMLLAIRALFGLAEGVAFPTMSTFL 239
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/86 (29%), Positives = 42/86 (48%)
Frame = +3
Query: 462 YAWDSSLQGYILSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAG 641
Y W S G + SSF +GY+++ I G L +G + + G+ + S+ L P AA
Sbjct: 129 YGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAYGVALWSLATFLSPWAAARS 188
Query: 642 YGWLIVVRFIQGLGEGPIVPCTHAML 719
+ R + G+ EG +P + M+
Sbjct: 189 LWLFLSTRVLLGMAEGVALPSMNNMV 214
>01_01_1224 -
9888726-9888820,9889042-9889085,9889194-9889282,
9889390-9889434,9889849-9889956,9890042-9890127,
9890324-9890411,9890669-9890872,9891251-9891326,
9891429-9891478,9891753-9891815,9891942-9891995,
9892079-9892181,9892266-9892368,9892563-9892623,
9892746-9892786,9893183-9893348
Length = 491
Score = 34.7 bits (76), Expect = 0.078
Identities = 20/72 (27%), Positives = 39/72 (54%)
Frame = +3
Query: 486 GYILSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVR 665
G++ +++F G I+ +P+GI + ++G + + + +L VF L ++ Y IV R
Sbjct: 87 GFVGATYFLGRTISAVPWGIFADKYGRKPCIVISILSVIVFNTLFGLSTT--YWMAIVTR 144
Query: 666 FIQGLGEGPIVP 701
+ GL G + P
Sbjct: 145 GLLGLLCGILGP 156
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 34.3 bits (75), Expect = 0.10
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +3
Query: 468 WDSSLQGY-ILSSF-FYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAG 641
W+ S + +LSS F G +I +G +S ++G R+ L L S G L A
Sbjct: 246 WNISAENESLLSSVVFAGMLIGASGWGFVSDKYGRRICLLFSTLFASGMGFLS--AFSPN 303
Query: 642 YGWLIVVRFIQGLGEG 689
Y L+ +RF+ G+G G
Sbjct: 304 YSCLLALRFLVGIGVG 319
>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
Length = 427
Score = 31.9 bits (69), Expect = 0.55
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +3
Query: 513 GYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVRFIQGLGEGP 692
G + +IP G ++R G R L + ++ S+ L+P+ + L++ R G+ +G
Sbjct: 49 GEYLWEIPGGWAAQRIGGRRVLLLSFVLWSLICGLIPLDPKREV-ILVLSRLFVGVAQGF 107
Query: 693 IVPCTHAMLXQ 725
I P H +L Q
Sbjct: 108 IFPAIHTVLAQ 118
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 31.5 bits (68), Expect = 0.72
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 16/93 (17%)
Frame = +3
Query: 459 DYAWDSSLQGYILSSFFYGYVITQIPFGILSKRFGARLFL------------GVGML--- 593
++ + +G + S F G +I G++S R+G + G+G L
Sbjct: 63 EWGVSGAAEGLVSSVVFAGMLIGACLGGLISDRYGRSFLIATLQSKYIYFNFGIGFLSTA 122
Query: 594 -INSVFGLLVPVAAEAGYGWLIVVRFIQGLGEG 689
+ +FGLL A Y L+V+RF+ GLG G
Sbjct: 123 VVTGIFGLLS--AFSPNYASLLVLRFVVGLGLG 153
>05_03_0294 + 11818391-11820268,11820332-11820550,11820752-11821644,
11829889-11829905,11829927-11830183
Length = 1087
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 380 SKSCVVDHSNDGDRHVRPHDVSVCHSEKQHERNPVPSSKPASV 252
S + VV+H D R PH VS +Q P P+ P S+
Sbjct: 910 SAALVVEHDEDDPRSAHPHPVSTRPGREQGGEAPEPNGGPRSL 952
>05_03_0227 +
10655204-10655269,10656333-10656393,10656570-10656672,
10656768-10656870,10656951-10657004,10657124-10657186,
10657884-10658105,10658249-10658336,10658561-10658646,
10659003-10659110,10659201-10659245,10659511-10659601,
10659662-10659765
Length = 397
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = +3
Query: 486 GYILSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWLIVVR 665
G++ +S+F + +P+GI + ++G + + + +L F L ++ Y IV R
Sbjct: 40 GFVAASYFLARTFSSVPWGIFADKYGRKPCIVISILSVIFFNTLFGLSTR--YWMAIVTR 97
Query: 666 FIQGLGEGPIVP 701
+ G+ G + P
Sbjct: 98 GMLGMLCGILGP 109
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 688 PSPSPCMNLTTMSHPYPASAATGTSRPNTEFI-SIPTPRN 572
P P P L+ SHP P + T+ P+ + +PTPR+
Sbjct: 75 PPPLPPTTLSCSSHPTPPPPPSPTTSPSASSLPPVPTPRS 114
>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
Length = 528
Score = 28.7 bits (61), Expect = 5.1
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = +3
Query: 474 SSLQGYILSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAEAGYGWL 653
S+L G I +F Y + G L R R+FL +GM +VF L AGY WL
Sbjct: 118 SALLGEIDVAFLAVYSVGMFFAGHLGDRMDLRIFLTIGMFGTAVFTALF----GAGY-WL 172
Query: 654 IVVRF 668
+ F
Sbjct: 173 NIHNF 177
>03_06_0096 -
31627332-31627570,31628467-31628743,31628963-31629118,
31629205-31629381,31629543-31629745,31630680-31630995
Length = 455
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -2
Query: 688 PSPSPCMNLTTMSHPYPASAATGTSRPNTEFISIPTPRNKRAPNL 554
P+P P NLT + H AA G +P + + +N P +
Sbjct: 80 PTPPPAANLTRVDHTGAVRAADGARKPCLKILGPEKLQNLELPEV 124
>07_03_1293 -
25563431-25563545,25564078-25564196,25564300-25564467,
25564565-25564627,25564709-25564816,25565125-25565237,
25565313-25565609,25565724-25565802,25566116-25566224,
25566324-25566365,25567023-25567153,25568100-25568648
Length = 630
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = -2
Query: 736 AAPTWXS---IA*VHGTMGPSPSPCMNLTTMSHPYPASAATGTSRPNTEFISIPTP 578
A P W + + G PSPSP +L + S P + A + + P + +P P
Sbjct: 38 ATPAWKTKPWASPFFGFSTPSPSPAHHLFSASSPRRSPAPSAPTTPARRLLRLPFP 93
>07_03_0965 - 22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 650 PSVPSFGGDRH*QTEHRVYQHTHSEEQASPEPLRQNPERNL 528
P+VP F G H H + H ++ ASP+ L++NP N+
Sbjct: 904 PAVPFFNG--HVYPSHML--HPSQQQGASPQNLQKNPMSNM 940
>06_03_0419 -
20583812-20584123,20585911-20586006,20586195-20586298,
20586565-20586649
Length = 198
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +3
Query: 381 VIAEEIDTECGPVNPNKTS-----VVSTQDGDYAWDSSLQGYILSS 503
V+ +E + CGPV PN +S ++ DG S L G+IL +
Sbjct: 64 VLQKESPSWCGPVGPNGSSHTGPQTLNPSDGKIFLHSGLTGFILQN 109
>08_02_0797 +
21307534-21307639,21307907-21308988,21309385-21309432,
21309705-21310217
Length = 582
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 165 FPFTMVSKTQGARVLVWEQPGLEDQRSPRYTGGLGTRHWVTFMLFLGMANA 317
F F M+ A W + + PRY GGL +H V + L L + ++
Sbjct: 190 FHFGMLGWDGKAAGAAWPDVAGDPRAVPRYPGGLNLQHSVEYWLTLDILSS 240
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 688 PSPSPCMNLTTMSHPYPASAATGTSRPNT 602
P PSP T HP P S AT +SR T
Sbjct: 74 PPPSPPPLSATTPHPPPPSPATSSSRTAT 102
>04_03_0438 +
15929220-15929453,15929564-15929764,15930874-15931046,
15931131-15931233,15931763-15932107
Length = 351
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 182 VQDSRSPRARLGTTWTRRSTQPSLHWRA 265
V+ R P+A TTW T P W+A
Sbjct: 323 VRGDRYPQAMANTTWQNSETPPLSSWKA 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,657,851
Number of Sequences: 37544
Number of extensions: 536750
Number of successful extensions: 1772
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1771
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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