Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4d01
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             31   0.011
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   0.98 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   4.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 31.1 bits (67), Expect = 0.011
 Identities = 23/84 (27%), Positives = 38/84 (45%)
 Frame = +2

Query: 185  QDSRSPRARLGTTWTRRSTQPSLHWRAWNSALGYVHAVSRNGKRLHHEDEHVGRHRCYGQ 364
            Q++  P+   G   TR       ++   +S +  V AV R    +H    +      YG 
Sbjct: 1019 QEANKPKPATGGKGTRPKRGKYRNYDR-DSLVEAVRAVQRGEMSVHRAGSY------YGV 1071

Query: 365  PHSSYCHR*RDRH*MRPSQS*QNQ 436
            PHS+  ++ ++RH MRP +  Q Q
Sbjct: 1072 PHSTLEYKVKERHLMRPRKRDQKQ 1095


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 513 GYVITQIPFGILSKRFGA--RLFLGVGMLINSVFGLLVPV 626
           G ++  I FG+++ +FGA  +L +   M++N +   LV +
Sbjct: 242 GMIVFCITFGLVAGQFGAQGKLIVDFFMILNEIIMKLVGI 281


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 414 PVNPNKTSVVSTQDGDYAWDSSLQGYILSS--FFYGYVITQIPFGILSKRF 560
           P +  +   V  Q+ DY  D +   YILS   +++   I  I + ++S ++
Sbjct: 285 PFHTQRLLYVYAQESDYYPDLNEWLYILSGCLYYFSTTINPILYNLMSIKY 335


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/28 (25%), Positives = 12/28 (42%)
 Frame = -2

Query: 688 PSPSPCMNLTTMSHPYPASAATGTSRPN 605
           P P  C     +  P  +   +GT +P+
Sbjct: 563 PQPPQCPRFRKLDSPSDSGIESGTEKPD 590


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,356
Number of Sequences: 438
Number of extensions: 4765
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)