Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c24
         (217 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    23   7.2  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    22   9.6  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    22   9.6  

>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +1

Query: 37  PLKPXTLHDGNIKKSVYENIXYVRKLXXKENMPGEHDHKF 156
           PL+    H+   +  + E + Y+++L   E +  E  H F
Sbjct: 190 PLEELEEHNKTSQNRMEEALNYLKQLQKNEPLVHERSHTF 229


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 59  TMVTLKNRFTKISHMFAS*XXKK 127
           T + + NR+ KISH  ++   KK
Sbjct: 65  TKIPVPNRYRKISHRLSTLSNKK 87


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 16  FYNDNRKPLKPXTLHDGNIKKSVY 87
           FY D+R PL P ++   + +  VY
Sbjct: 314 FYGDDRMPLSPLSMIVDSTQLVVY 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.138    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 585,677
Number of Sequences: 5004
Number of extensions: 7473
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)