Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4c21
(446 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 120 1e-28
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 39 3e-04
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 30 0.14
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 29 0.25
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 29 0.33
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 28 0.57
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 28 0.57
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar... 27 1.3
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 1.3
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 27 1.3
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 1.7
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 27 1.7
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 27 1.7
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 26 2.3
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 3.0
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 26 3.0
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 4.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 4.0
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.3
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|... 25 7.0
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.0
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 25 7.0
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 24 9.3
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 24 9.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 24 9.3
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 120 bits (289), Expect = 1e-28
Identities = 54/117 (46%), Positives = 82/117 (70%)
Frame = +1
Query: 94 MNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKDQMSKMREGPAKNS 273
M+RLFGR P +P S+TD I ++D R+D++E K+ KLD +L ++ +++ R GP + +
Sbjct: 1 MHRLFGRKPPTQPTASLTDAIDSLDKRSDSVEVKIAKLDAQLSVFQQKIANTRPGPGQTA 60
Query: 274 VKQKAMRVLKQKKMYEQQLDSLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQKK 444
+KQ+AM VL+QKK+YE QL L+ QSFNMEQA T++LK+T T+ M++ Q K
Sbjct: 61 LKQRAMNVLRQKKIYESQLQQLQQQSFNMEQAAMTTESLKNTMATVQTMQETARQLK 117
>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
Vps32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 39.1 bits (87), Expect = 3e-04
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 235 QMSKMREGPAKNSVKQK--AMRVLKQKKMYEQQLDSLRAQSFNMEQANYATQTLKDTHTT 408
Q+++ E KN+ K A+ LK+KKM+E +L + N+EQ ++ Q T
Sbjct: 41 QIAEQTEIARKNATTNKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFET 100
Query: 409 ISAMKDGVTQKK 444
+ AM+ G K
Sbjct: 101 LQAMRQGAEAMK 112
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 30.3 bits (65), Expect = 0.14
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Frame = +1
Query: 76 KRFKPNMNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKDQMSKMRE 255
K K N L + +PG S+T +K DN+ ++V L + DQ++K +
Sbjct: 227 KDLKDRKNALAKEFEESQPGSSLT--LKEQANVIDNLRKEVFGLKLKCYFLYDQLNKFHD 284
Query: 256 GPAKNSVKQ----KAMRVLKQKKM--YEQQLDSLRA-----QSFNMEQANYATQTL 390
++ +KQ K + + Q+ + YE+++ L + QSFN+ + A L
Sbjct: 285 QEVQDIMKQNIDLKTLTMELQRAVAGYEKKISGLESRIKPDQSFNLSTPSPAPSNL 340
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 29.5 bits (63), Expect = 0.25
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 178 DNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYE 321
+ +E++V+ L EL KYKD + E A + ++ L+Q+K+Y+
Sbjct: 141 EKLEREVENLRKELDKYKDLVETEAEKRAAITKEECEKSWLEQQKLYK 188
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 29.1 bits (62), Expect = 0.33
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 82 FKPNMNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKDQMSKMREGP 261
F+ + +R ++ K P P T + + ADN + K +D + + D + M E P
Sbjct: 1459 FETSSHRPERSSEKKSPSPVFTSVKQTAENDADNEDDKTD-MDDQTEETLDADNTMEEEP 1517
Query: 262 AKNSV 276
+K+ +
Sbjct: 1518 SKDDL 1522
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 28.3 bits (60), Expect = 0.57
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +1
Query: 178 DNIEQKVQKLDTELR---KYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYE 321
DN+E+K+++L E+R + KD+ SK R A+ +Q ++ YE
Sbjct: 417 DNLERKLRQLRVEIRALEREKDEASKERLKAARKEAEQVEEETRPIREKYE 467
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 28.3 bits (60), Expect = 0.57
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +1
Query: 61 FTEFYKRFKPNMNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKD 234
+T F F+PN+N+L K G + N D N+ Q V +LD E KYKD
Sbjct: 64 YTNFVNSFRPNINQL----KAVYMGLKAFESCSN-DEALRNLNQIVNELDEE--KYKD 114
>SPBC215.14c |vps20||vacuolar sorting protein
Vps20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 265 KNSVKQKAMRVLKQKKMYEQQLDSLRAQSFNMEQ 366
++S K+ A+R LK KK+Y + Q N+EQ
Sbjct: 48 RDSDKRGALRALKAKKLYSGLITQTYGQLGNIEQ 81
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -3
Query: 432 YTILHCRYCGMSVLQCLRCIICLFHVERLGTETIKLLFIHFLLF 301
Y +HC + L LR +IC+ ++ + + HFLLF
Sbjct: 381 YLFMHCNNGEKTSLHLLRTLICM-KLDFSNAQLAAKILFHFLLF 423
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 27.1 bits (57), Expect = 1.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 393 GHSYHNICNEGWC 431
GH +HN C E WC
Sbjct: 57 GHYFHNHCLESWC 69
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 1.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 124 KEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKDQMSK 246
KE + D ++++ G DN+ ++ TEL+K D + K
Sbjct: 930 KEKHQQLLDLLESLVGNNDNLIDSIKTPHTELQKITDHVLK 970
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 178 DNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKK 312
D IEQ + ++K KD + + + PA+ ++ A +V+ +KK
Sbjct: 334 DAIEQTITWAKEYIKKAKDSLLCLPDSPARKALFALADKVITRKK 378
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 26.6 bits (56), Expect = 1.7
Identities = 17/89 (19%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +1
Query: 175 ADNIEQKVQKLDTELRKYKDQMSKMRE--GPAKNSVKQKAMRVLKQKKMYEQQLDSLRAQ 348
++ +++ V+KLD + Y+D M E +S+ + + + E S+
Sbjct: 46 SERLQESVKKLDANKKTYEDAKLSMGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIVQM 105
Query: 349 SFNMEQANYATQTLKDTHTTISAMKDGVT 435
+ ++ ++A Q L + T + ++ VT
Sbjct: 106 TSEIKNLDFAKQNLATSMTMLKRLQMLVT 134
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 2.3
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +1
Query: 148 DCIKNVDGRADNIEQKVQKLDTELRKYKDQMSKM 249
+C K VDG + IE++++ D ++ ++Q ++
Sbjct: 34 ECYKTVDGDDNPIEERIKACDAGIQTSEEQKKEL 67
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 417 CRYCGMSVLQCLRCIICLFHVERLGTETIKLLFIHFL 307
C Y +L C ++ LF V LG E L I+ L
Sbjct: 689 CFYLEFEILYCSAIVLFLFSVMHLGAENPLLESIYLL 725
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 3.0
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +1
Query: 265 KNSVKQKAMRVLKQKKMYEQQLDSLRAQS-----FNMEQANYATQTLKDTHTTI 411
KN +K+ A+ K M + + +L + +++E+ + +Q LKDT TT+
Sbjct: 173 KNDLKKVALSP-SLKSMVDDETTALETHNDMQDIYSLEETKFVSQHLKDTLTTV 225
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 4.0
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +1
Query: 184 IEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDSLRAQSFNME 363
+EQ +++L ELR +++ K +N + K +K +YE + A + N +
Sbjct: 517 LEQIIEELHEELRSLEEESIKESSATQQNENQHKRS---SRKLLYEDKQAIQEAHTINTK 573
Query: 364 QANYATQTL 390
+ + TL
Sbjct: 574 RKLWPQSTL 582
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 4.0
Identities = 16/85 (18%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 175 ADNIEQKVQKLDTELRKYKDQMSKMREG-PAKNSVKQKAMRVLKQKKMYEQQLDSLRAQS 351
A I ++ K D +K K + + P+K SVK++ K++ E + +S ++S
Sbjct: 37 AKEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
Query: 352 FNMEQANYATQTLKDTHTTISAMKD 426
+ + ++ + ++ ++ S+ +
Sbjct: 97 ESSSSESESSSSESESSSSESSSSE 121
>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 25.0 bits (52), Expect = 5.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 444 FFLCYTILHCRYCGMSVLQCLRCII 370
F +CY L+C C +SVL L CI+
Sbjct: 27 FLVCYP-LYCVVCFVSVLCRLYCIL 50
>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.6 bits (51), Expect = 7.0
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -3
Query: 216 FCVQFLDFLFNIIGSAIYVFNAIRNAGARFFGFR 115
FC+ LDF G+ I F+ I F F+
Sbjct: 26 FCIMILDFKIEYPGTGIAPFHPINTETPSGFNFK 59
>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 163
Score = 24.6 bits (51), Expect = 7.0
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 274 VKQKAMRVLKQKKMYE-QQLDSLRAQSFNMEQANYATQTLKDTHTTISAMK 423
V +KA + +K E ++L+S+ A++ ++ NY+ +DT T ++ ++
Sbjct: 15 VDEKAKSWIAEKVEEELRRLESVGAKAIPLDVKNYSVMLDEDTDTVVNRIE 65
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 7.0
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 244 KMREGPAKNSVK--QKAMRVLKQKKMYEQQLDSLRAQSFNME 363
K R KN ++ Q A KQKK YEQ + L N E
Sbjct: 239 KARRQFGKNGIRLSQDAQEEEKQKKKYEQHIKKLLDGESNEE 280
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 178 DNIEQKVQKLDTELRKYKD 234
D + QKV++L+ ELR KD
Sbjct: 123 DQLRQKVRQLEEELRILKD 141
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 24.2 bits (50), Expect = 9.3
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 265 KNSVKQKAMRVLKQKKMYEQQLDSLRAQSFNMEQ--ANYATQTLKDT 399
K++VKQK +R K+K + + S S+N+ + A+ +L DT
Sbjct: 183 KHTVKQKPLREKKKKPLKSSEEISKDMGSYNLPRFLASLIDASLNDT 229
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.2 bits (50), Expect = 9.3
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 298 LKQKKMYEQQLDS-LRAQSFNMEQANYATQTLKDTHTTISAMKD 426
L KK+ Q + S L + +EQ+N+ LK + ++++KD
Sbjct: 753 LASKKIEVQNVSSQLSICNSQLEQSNHIVDNLKSENLLLTSVKD 796
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,885,162
Number of Sequences: 5004
Number of extensions: 36820
Number of successful extensions: 154
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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