Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c21
         (446 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        26   0.53 
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   1.6  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   1.6  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    24   2.1  
AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakini...    23   6.5  

>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 26.2 bits (55), Expect = 0.53
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
 Frame = +1

Query: 217 LRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQ------QLDSLRAQSFNMEQANYA 378
           ++K +D + K + GP       K   VLK ++M  Q      QL  +R QS + +  + A
Sbjct: 168 IQKAEDLIQKDKVGPRVLESAAKFCEVLKGREMQRQFRLEQEQLQQMRKQSVDTQTLSQA 227

Query: 379 TQTLK 393
              LK
Sbjct: 228 NHWLK 232


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 19/73 (26%), Positives = 38/73 (52%)
 Frame = +1

Query: 148 DCIKNVDGRADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQ 327
           D I+N  G+ +N  +++Q+   ELR+ K  + +       +  +Q  M+V +Q    EQ+
Sbjct: 629 DKIRNQRGQIENSIKELQERCAELREQKRDLQEQ-----LSKYQQTKMKVKRQ----EQK 679

Query: 328 LDSLRAQSFNMEQ 366
              L A+  N+++
Sbjct: 680 CKELTARLVNVDE 692


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 193 KVQKLDTELRKYK-DQMSKMREGPAKNSVKQKAMRVLKQKK 312
           K+   + E ++ K DQ+SK +E       K++A  VLK+KK
Sbjct: 237 KLYHNEKEAKRLKEDQISKQQELNIIEKRKEEADEVLKEKK 277


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = +1

Query: 151  CIKNVDGRADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQL 330
            CI  +D    N   +     +EL+K KD+++K++E     +   K +R L     Y +  
Sbjct: 1100 CILELDTMLANHLHREAFSSSELQKAKDRLAKLQELSGGLNTIWKGVRWLMDVIGYAR-- 1157

Query: 331  DSLRAQSFNMEQ 366
            D       NM+Q
Sbjct: 1158 DRANMPELNMKQ 1169



 Score = 23.8 bits (49), Expect = 2.8
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 133 GPSITDCIKN-VDGRADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQK 309
           G  IT    N VD  A +  + V  L +  ++ + Q       P+    KQK +   KQ 
Sbjct: 354 GTIITPATTNSVDVLAVHNAKSVSPLPSYTQQQQQQQQSAAAPPSY--WKQKKLPTKKQH 411

Query: 310 KMYEQQLDSL 339
           K  + QLD L
Sbjct: 412 KQLQAQLDKL 421


>AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakinin
           GPCR protein.
          Length = 634

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 170 PSTFLMQSVMLGPGSLGFALPNNL 99
           P+      ++ GPGSL +  PN++
Sbjct: 19  PTELTQYDLLFGPGSLLYRPPNSM 42



 Score = 22.6 bits (46), Expect = 6.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 335 LSSCCSYIFFCF 300
           +SSCC+ I +CF
Sbjct: 514 ISSCCNPITYCF 525


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,353
Number of Sequences: 2352
Number of extensions: 9664
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 37843779
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)