Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4c21
(446 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 23 2.0
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 23 2.0
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 23 2.0
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 23 2.0
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 23 2.0
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 23 2.0
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 23 2.0
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 23 2.0
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 23 2.0
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 23 2.0
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 22 2.7
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 22 2.7
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 21 4.6
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 21 4.6
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 21 4.6
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 21 4.6
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 21 4.6
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 21 4.6
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 21 4.6
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 21 4.6
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 21 4.6
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 21 4.6
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 21 4.6
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 21 4.6
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 4.6
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 4.6
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 4.6
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 4.6
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 21 6.1
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 6.1
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 21 6.1
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 21 8.1
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.6 bits (46), Expect = 2.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K + E RKY + SK R K K +++
Sbjct: 41 RSREREQKLYKNEREYRKY-GETSKERSRNRTEREKSKEPKII 82
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.6 bits (46), Expect = 2.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K + E RKY + SK R K K +++
Sbjct: 41 RSREREQKLYKNEREYRKY-GETSKERSRNRTEREKSKEPKII 82
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.6 bits (46), Expect = 2.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K + E RKY + SK R K K +++
Sbjct: 41 RSREREQKLYKNEREYRKY-GETSKERSRNRTEREKSKEPKII 82
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.6 bits (46), Expect = 2.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K + E RKY + SK R K K +++
Sbjct: 41 RSREREQKLYKNEREYRKY-GETSKERSRNRTEREKSKEPKII 82
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.6 bits (46), Expect = 2.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K + E RKY + SK R K K +++
Sbjct: 274 RSREREQKLYKNEREYRKY-GETSKERSRNRTEREKSKEPKII 315
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 2.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K + E RKY + SK R K K +++
Sbjct: 274 RSREREQKLYKNEREYRKY-GETSKERSRNRTEREKSKEPKII 315
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 2.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K + E RKY + SK R K K +++
Sbjct: 274 RSREREQKLYKNEREYRKY-GETSKERSRNRTEREKSKEPKII 315
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 2.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K + E RKY + SK R K K +++
Sbjct: 274 RSREREQKLYKNEREYRKY-GETSKERSRNRTEREKSKEPKII 315
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 2.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K + E RKY + SK R K K +++
Sbjct: 274 RSREREQKLYKNEREYRKY-GETSKERSRNRTEREKSKEPKII 315
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.6 bits (46), Expect = 2.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K + E RKY + SK R K K +++
Sbjct: 263 RSREREQKLYKNEREYRKY-GETSKERSRNRTEREKSKEPKII 304
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 2.7
Identities = 18/74 (24%), Positives = 29/74 (39%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDSLRAQS 351
R+ EQK+ K E RKY+ + SK R + K +++ + +
Sbjct: 41 RSREREQKLYKNKREYRKYR-ETSKERSRNRTERERSKEPKIISNNNSLSNNYN--YNNN 97
Query: 352 FNMEQANYATQTLK 393
+N NY T K
Sbjct: 98 YNNYNNNYNTNYKK 111
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.2 bits (45), Expect = 2.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK K + E RKY+ + SK R + + K +++
Sbjct: 274 RSREREQKSYKNEREYRKYR-ETSKERFRDRRERERSKESKII 315
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 21.4 bits (43), Expect = 4.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -1
Query: 323 CSYIFFCFNTLIAFCLT 273
C FFC N + ++C T
Sbjct: 284 CWVPFFCVNIVTSYCKT 300
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 4.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K E RKY+ + SK R + K +++
Sbjct: 41 RSREREQKLYKNKREYRKYR-ETSKERSRNRTERERSKEPKII 82
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.4 bits (43), Expect = 4.6
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDSLRAQS 351
R+ EQK K + E RKY RE + S + K+ K+ ++ + +
Sbjct: 41 RSREREQKSYKNEREYRKY-------RETSKERSQDRTERETSKEPKIISSLSNNYKYSN 93
Query: 352 FNMEQANY 375
+N NY
Sbjct: 94 YNNYNNNY 101
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.4 bits (43), Expect = 4.6
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDSLRAQS 351
R+ EQK K + E RKY RE + S + K+ K+ ++ + +
Sbjct: 41 RSREREQKSYKNEREYRKY-------RETSKERSQDRTERETSKEPKIISSLSNNYKYSN 93
Query: 352 FNMEQANY 375
+N NY
Sbjct: 94 YNNYNNNY 101
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 4.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K E RKY+ + SK R + K +++
Sbjct: 41 RSREREQKLYKNKREYRKYR-ETSKERSRNRTERERSKEPKII 82
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 4.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K E RKY+ + SK R + K +++
Sbjct: 41 RSREREQKLYKNKREYRKYR-ETSKERSRNRTERERSKEPKII 82
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 4.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K E RKY+ + SK R + K +++
Sbjct: 41 RSREREQKLYKNKREYRKYR-ETSKERSRNRTERERSKEPKII 82
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 4.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K E RKY+ + SK R + K +++
Sbjct: 41 RSREREQKLYKNKREYRKYR-ETSKERSRNRTERERSKEPKII 82
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 4.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K E RKY+ + SK R + K +++
Sbjct: 41 RSREREQKLYKNKREYRKYR-ETSKERSRNRTERERSKEPKII 82
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 4.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K E RKY+ + SK R + K +++
Sbjct: 41 RSREREQKLYKNKREYRKYR-ETSKERSRNRTERERSKEPKII 82
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 4.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K E RKY+ + SK R + K +++
Sbjct: 41 RSREREQKLYKNKREYRKYR-ETSKERSRNRTERERSKEPKII 82
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 4.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K E RKY+ + SK R + K +++
Sbjct: 41 RSREREQKLYKNKREYRKYR-ETSKERSRNRTERERSKEPKII 82
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 4.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -1
Query: 437 CVTPSFIAD 411
CV PSF+AD
Sbjct: 124 CVVPSFVAD 132
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.4 bits (43), Expect = 4.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K E RKY+ + SK R + K +++
Sbjct: 274 RSREREQKLYKNKREYRKYR-ETSKERSRNRTERERSKEPKII 315
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.4 bits (43), Expect = 4.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 172 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVL 300
R+ EQK+ K E RKY+ + SK R + K +++
Sbjct: 274 RSREREQKLYKNKREYRKYR-ETSKERSRNRTERERSKEPKII 315
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.4 bits (43), Expect = 4.6
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = -2
Query: 61 RNFSEPILINLQILLAFLN 5
+NF++P+L+N Q+ +L+
Sbjct: 1032 KNFNQPLLVNDQLGQLYLD 1050
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 21.0 bits (42), Expect = 6.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 355 NMEQANYATQTLKDTHTTISAMKDGVTQK 441
N + Y QTL + + ++ + GVT K
Sbjct: 42 NNKSKKYFEQTLNELNFNLNYVNKGVTYK 70
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.0 bits (42), Expect = 6.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 308 RKCMNNNLIVSVPSLSTWNKQIMQ 379
+ MN+N IVS SLS+ +++ Q
Sbjct: 339 KTAMNSNQIVSDNSLSSSEEKLKQ 362
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 21.0 bits (42), Expect = 6.1
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = -2
Query: 142 CWGQVLWVSLFRIICSC 92
CW + + RI+C+C
Sbjct: 392 CWSRDFRRAFVRILCAC 408
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 20.6 bits (41), Expect = 8.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 125 KNLAPALRIALKT*MAEPIILNRKSRNW 208
KN+ P L+IAL + P + NW
Sbjct: 602 KNIIPKLQIALSEFVINPHQQHLDQWNW 629
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,856
Number of Sequences: 438
Number of extensions: 2308
Number of successful extensions: 36
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -