Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c17
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    29   0.32 
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    29   0.55 
SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr 2||...    28   0.73 
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    26   2.9  
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.0  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   9.0  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   9.0  
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    25   9.0  

>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 64  KADETRVETVPQQRRGLLHGFRAHQARARDVLAPLLAKLIRSV 192
           KA E R+E V +Q R L  G   + +   DVLAPL +   +++
Sbjct: 198 KAYERRLEEVEKQLRSLDEGMEDYLSLETDVLAPLCSDSSKAI 240


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 174 CEQWGKHVSSARLMCSKSVQ*TSPLLRYGLNSCFISFS-SSVWCTVGSVCST 22
           CE +G +V  A +   K VQ     L+YGL + F+S + + ++  VG +C T
Sbjct: 155 CEIFGLYV--AFIYLEKGVQVLCDQLKYGLTNTFLSITIALLFLMVGWLCDT 204


>SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 313 YVLEQGNPQVKFVAKDIASSLKYGNCKDAVSRHVDKKYKY 432
           ++LEQ   Q++   +D  + LK  + K  V +H+D  + Y
Sbjct: 11  HLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTY 50


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 376 KYGNCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVXKQGDP 501
           KY  CK  +S     +Y   + +S   +P +AP+ + +   P
Sbjct: 172 KYAGCKIDISTFEQSRYPRVFVDSQLPVPKAAPSPIEEWYPP 213


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +1

Query: 367 SSLKYGNCKDAVSRHVDKKYKYTYSESGARLPPSAPNSV 483
           +++ Y +C  A  RH         SE+G   P S  N +
Sbjct: 154 TAVPYDSCLPAPDRHTPSSASSRASETGTTSPQSMRNQI 192


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -1

Query: 506 YSGSPCFXTLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLLAMSLATNLTCGFP 327
           Y+GS    T     G    P ++YV   + +T   T ++ +P       S+ T LT G P
Sbjct: 248 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP------GSVTTTLT-GAP 300

Query: 326 CSSTYL 309
            + T +
Sbjct: 301 SNGTVI 306



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -1

Query: 506 YSGSPCFXTLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLLAMSLATNLTCGFP 327
           Y+GS    T     G    P ++YV   + +T   T ++ +P       S+ T LT G P
Sbjct: 326 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP------GSVTTTLT-GAP 378

Query: 326 CSSTYL 309
            + T +
Sbjct: 379 SNGTVI 384



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -1

Query: 506 YSGSPCFXTLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLLAMSLATNLTCGFP 327
           Y+GS    T     G    P ++YV   + +T   T ++ +P       S+ T LT G P
Sbjct: 404 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP------GSVTTTLT-GAP 456

Query: 326 CSSTYL 309
            + T +
Sbjct: 457 SNGTVI 462



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -1

Query: 506 YSGSPCFXTLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLLAMSLATNLTCGFP 327
           Y+GS    T     G    P ++YV   + +T   T ++ +P       S+ T LT G P
Sbjct: 482 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP------GSVTTTLT-GAP 534

Query: 326 CSSTYL 309
            + T +
Sbjct: 535 SNGTVI 540



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -1

Query: 506 YSGSPCFXTLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLLAMSLATNLTCGFP 327
           Y+GS    T     G    P ++YV   + +T   T ++ +P       S+ T LT G P
Sbjct: 560 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP------GSVTTTLT-GAP 612

Query: 326 CSSTYL 309
            + T +
Sbjct: 613 SNGTVI 618


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 66  FSSSVWCTVGSVCSTYR 16
           F +SVWC + S C  +R
Sbjct: 171 FHTSVWCDMSSYCIAWR 187


>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 289 GQDTFTLRYVLEQGNPQVKFVAKDIASSLKYGNC 390
           G DT   RY+ E G   +KF+  D      Y NC
Sbjct: 77  GTDTRVFRYISEYGPENLKFIEFDF-----YPNC 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,638
Number of Sequences: 5004
Number of extensions: 36122
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)