Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c17
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0719 + 5239238-5239635,5239735-5239945,5240379-5240454,524...    29   1.7  
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549...    29   3.0  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    28   3.9  
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937...    27   6.8  
03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714...    27   6.8  
12_02_1187 - 26793455-26793496,26793599-26793717,26793813-267939...    27   9.0  
04_01_0316 + 4251465-4251590,4251664-4251719,4252973-4253087,425...    27   9.0  

>06_01_0719 +
           5239238-5239635,5239735-5239945,5240379-5240454,
           5240573-5240675,5241089-5241157,5241318-5241354,
           5241445-5241519,5241598-5241649,5241752-5241796,
           5241994-5242080,5242348-5242445
          Length = 416

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 355 KDIASSLKYGNCKDAVSRHVDKKY 426
           K +A S+  GN KD VSR +DK Y
Sbjct: 136 KTLAESMALGNIKDYVSRPMDKPY 159


>11_04_0430 +
           17653553-17654285,17654305-17654627,17654795-17654921,
           17655123-17655338,17655463-17655494
          Length = 476

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 52  VVHGGLGLQHVPH 14
           VV GGLG QH+PH
Sbjct: 241 VVQGGLGFQHIPH 253


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 357 LGHKLDLRVSLLE-HVPQRKRVLAEFELPDFNLS 259
           L  KL+     LE H+P R+  + +F+LP F +S
Sbjct: 329 LAEKLNSEPEFLEKHIPTRQVTVGQFKLPKFKIS 362


>11_05_0014 +
           18392622-18392834,18393064-18393147,18393709-18393797,
           18393889-18394063,18394370-18394489,18394591-18394677,
           18394755-18394826,18395166-18395279,18395387-18395487,
           18395576-18395669,18395794-18395961,18396287-18396352,
           18396475-18396531,18396708-18396927,18397015-18397151,
           18397573-18397641,18397722-18397781,18397927-18397998,
           18398171-18398218,18398376-18398495,18398743-18398808,
           18399341-18399453,18399821-18399905,18400246-18400356,
           18400436-18400531,18401075-18401143,18401235-18401453
          Length = 974

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 319 LEQGNPQVKFVAKDIASSLKYGNCKDAVSRHVDKKYKYTYSESGARLPPSA 471
           ++ G  Q+K       +   Y N K  V  + ++KYKY   + G    P A
Sbjct: 573 MQIGQGQLKLQYNAAGALSLYSNSKTQVEANFEQKYKYYIGQDGNGSDPQA 623


>03_02_0786 -
           11169820-11170158,11170245-11170433,11171173-11171469,
           11171568-11171630,11171884-11171997,11173011-11173091,
           11173176-11173307,11174265-11174363,11174453-11174530,
           11174641-11174901
          Length = 550

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 433 YICIFYPRVCLQRLYN--FHILNCWRCPWP 350
           ++CI +P   L  L+N  F I + W  P P
Sbjct: 292 FVCIMHPHATLSSLFNSFFDIFSHWHWPLP 321


>12_02_1187 -
           26793455-26793496,26793599-26793717,26793813-26793939,
           26794382-26794520,26794565-26794833,26794923-26795056,
           26795630-26795750
          Length = 316

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 8   DQMRYVLQTEPTVHHTLLEKLMKQELRPYRNSGEVY 115
           +Q+R+V+Q  PT  H  LE L+ ++   Y     ++
Sbjct: 158 EQLRHVVQHSPTCLHCALELLLNEQESMYERYAALF 193


>04_01_0316 +
           4251465-4251590,4251664-4251719,4252973-4253087,
           4253174-4253417,4254189-4254325,4255006-4255065,
           4255336-4255460,4256021-4256048,4256267-4256336,
           4256513-4256565,4256966-4257025,4257498-4257544,
           4257617-4257741,4258572-4258686,4258778-4258826,
           4260415-4260471,4261126-4261209,4261363-4261442,
           4262005-4262094,4262252-4262375
          Length = 614

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 265 VKIGQFKFGQDTFTLRYVLEQGNPQVKFVAKDIASS 372
           V+ G FK  +D   +   L++ N + +FVA ++ +S
Sbjct: 332 VRCGNFKISEDYQAVNVTLKKDNMRTEFVAAEVDNS 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,860,737
Number of Sequences: 37544
Number of extensions: 247053
Number of successful extensions: 722
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)