Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c17
         (518 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4234|AAF56792.1|  421|Drosophila melanogaster CG1894-PA...    31   0.94 
AY089475-1|AAL90213.1|  180|Drosophila melanogaster AT28768p pro...    28   8.7  
AE014298-1649|AAF48066.1|  180|Drosophila melanogaster CG2533-PA...    28   8.7  

>AE014297-4234|AAF56792.1|  421|Drosophila melanogaster CG1894-PA
           protein.
          Length = 421

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -2

Query: 469 PRAVVSPPTRCTYICIFYPR-VCLQRLYNFHILNC-WRCP 356
           P  V++      Y+C F  + +CL++ Y++H+ +C  RCP
Sbjct: 163 PYPVINDKATTIYVCEFCLKYMCLRKSYSYHLYDCKKRCP 202


>AY089475-1|AAL90213.1|  180|Drosophila melanogaster AT28768p
           protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 250 FIKLNLFTTTRDDSTKARNKLNGLVLRAVGQARLER 143
           F  L+L TTT DD  +AR K   + +      RLER
Sbjct: 52  FAALSLCTTTSDDQVRARAKRELMAMERRQLQRLER 87


>AE014298-1649|AAF48066.1|  180|Drosophila melanogaster CG2533-PA
           protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 250 FIKLNLFTTTRDDSTKARNKLNGLVLRAVGQARLER 143
           F  L+L TTT DD  +AR K   + +      RLER
Sbjct: 52  FAALSLCTTTSDDQVRARAKRELMAMERRQLQRLER 87


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,020,225
Number of Sequences: 53049
Number of extensions: 411139
Number of successful extensions: 1082
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1908489216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)