Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c17
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   3.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   3.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   5.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   5.7  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   5.7  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -2

Query: 262 EPF*FIKLNLFTTTRDDSTKARNKL----NGLVLRAVGQARLER 143
           EPF F+ L L     D   + R K+    N LVLR V QA  E+
Sbjct: 316 EPFPFLMLPLGADDPDSLRRKRQKINNSQNALVLRHV-QAEAEK 358


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 8/31 (25%)
 Frame = -1

Query: 335  GFPCSSTYLSVNVS--------WPNLNCPIL 267
            G P ++T+LS N +        WP+  CPIL
Sbjct: 1500 GIPPAATFLSPNSTTLVLRLHVWPDNGCPIL 1530


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 8/31 (25%)
 Frame = -1

Query: 335  GFPCSSTYLSVNVS--------WPNLNCPIL 267
            G P ++T+LS N +        WP+  CPIL
Sbjct: 1496 GIPPAATFLSPNSTTLVLRLHVWPDNGCPIL 1526


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 270 NRAVQIRPGHVYAEVRARARKPASQVC 350
           NR  +I        VR R   PASQVC
Sbjct: 603 NRIARIFDSASRTAVRPRYISPASQVC 629


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 270 NRAVQIRPGHVYAEVRARARKPASQVC 350
           NR  +I        VR R   PASQVC
Sbjct: 693 NRIARIFDSASRTAVRPRYISPASQVC 719


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
 Frame = -3

Query: 288 EFELPDFN-----LSHFNLLN*IYLQR 223
           E++LPD+       SH  LLN  YL+R
Sbjct: 248 EYDLPDYRGEEYLYSHKLLLNRYYLER 274


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
 Frame = -3

Query: 288 EFELPDFN-----LSHFNLLN*IYLQR 223
           E++LPD+       SH  LLN  YL+R
Sbjct: 248 EYDLPDYRGEEYLYSHKLLLNRYYLER 274


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -2

Query: 499 DRLALXRCLEPRAVVSPPTRCTYICIFYPRVCLQRLY 389
           DR    R  EP+ + S    C Y   +Y     ++LY
Sbjct: 291 DRRERERSKEPKIISSLSNSCNYSNNYYNNNNYKKLY 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,325
Number of Sequences: 438
Number of extensions: 2370
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)