Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c13
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   2.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   2.6  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   2.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   2.6  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   4.5  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   6.0  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   7.9  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   7.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.9  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 440 GDSGRGSLGSTPRSDSDEE 496
           GD G+GS  +    D DEE
Sbjct: 186 GDDGQGSSTNNDEDDDDEE 204


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 440 GDSGRGSLGSTPRSDSDEE 496
           GD G+GS  +    D DEE
Sbjct: 186 GDDGQGSSTNNDEDDDDEE 204


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +3

Query: 516 CVYVVIKCLE*LVMVNTLKKKHASIIGA 599
           CV  ++   E L ++N +KK+++++I +
Sbjct: 347 CVNTLVSEQEGLQLINEMKKRYSALINS 374


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 440 GDSGRGSLGSTPRSDSDEE 496
           GD G+GS  +    D DEE
Sbjct: 186 GDDGQGSSTNNDEDDDDEE 204


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 533 KMFRMTRDGEYVKEETCLY 589
           K+  M+RD  Y+   TCL+
Sbjct: 487 KVLAMSRDQNYLYRMTCLF 505


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = -2

Query: 556 ITSHSKHFITTYTQVFHSIRFFVTVRSRS*PQGPA-TAVTLGPGNKFRGIYIPRSH---- 392
           + ++    ++ Y ++ H++     +R    P  PA TAV      +++ IY         
Sbjct: 415 VKAYGAGLLSAYGELLHALSDKPELR----PFEPAVTAVQPYQDQEYQPIYFVAESFDDM 470

Query: 391 RSRSRRWIYVYDRFSRIRFN 332
           + + RRW+    R   +RFN
Sbjct: 471 KDKFRRWVSAMSRPFEVRFN 490


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 698 QDEYRSTHEIALHCI 654
           Q+ +R  HEIA+H I
Sbjct: 244 QEMHRKGHEIAVHSI 258


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 356 VVYINPPPRPRPMTTWD 406
           +  + PPP+P P  T++
Sbjct: 171 IACMGPPPQPEPPVTFN 187



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 156 WTLPALQHAGASRV 197
           ++LP + HA ASRV
Sbjct: 479 YSLPMVNHAAASRV 492


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/30 (20%), Positives = 17/30 (56%)
 Frame = -2

Query: 577  FFFNVFTITSHSKHFITTYTQVFHSIRFFV 488
            ++  +FTI + +  F+T +  +   + +F+
Sbjct: 1218 YYATIFTIITATSSFVTIHNVIGQFLGYFI 1247


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,320
Number of Sequences: 336
Number of extensions: 3777
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)