Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4c13
(746 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC113453-1|AAI13454.2| 318|Homo sapiens REXO1L1 protein protein. 64 4e-10
BC112074-1|AAI12075.1| 347|Homo sapiens REXO1L2P protein protein. 64 4e-10
AF495523-1|AAN77012.1| 318|Homo sapiens exonuclease GOR protein. 64 4e-10
BC032244-1|AAH32244.1| 1221|Homo sapiens REX1, RNA exonuclease 1... 59 1e-08
AB032964-1|BAA86452.1| 1239|Homo sapiens KIAA1138 protein protein. 59 1e-08
AK027872-1|BAB55422.1| 509|Homo sapiens protein ( Homo sapiens ... 31 3.3
AF103426-1|AAD19426.1| 104|Homo sapiens immunoglobulin kappa li... 31 3.3
AK123671-1|BAC85674.1| 520|Homo sapiens protein ( Homo sapiens ... 31 4.4
BC146775-1|AAI46776.1| 1320|Homo sapiens TNRC15 protein protein. 31 5.8
AY176045-1|AAO46889.1| 1299|Homo sapiens Grb10 interacting GYF p... 31 5.8
AK092764-1|BAC03970.1| 575|Homo sapiens protein ( Homo sapiens ... 31 5.8
AK001739-1|BAA91873.1| 1100|Homo sapiens protein ( Homo sapiens ... 31 5.8
AK001240-1|BAA91576.1| 328|Homo sapiens protein ( Homo sapiens ... 31 5.8
AB014542-1|BAA31617.2| 1329|Homo sapiens KIAA0642 protein protein. 31 5.8
AB011174-1|BAA25528.1| 962|Homo sapiens KIAA0602 protein protein. 30 7.7
>BC113453-1|AAI13454.2| 318|Homo sapiens REXO1L1 protein protein.
Length = 318
Score = 64.5 bits (150), Expect = 4e-10
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Frame = +2
Query: 500 DAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSSD-------SRYACCKSMLGSRGC 658
D+ +C RC + ++ G V+++ C YHWGRV S S+Y CC + GS GC
Sbjct: 51 DSSCRVCCRCGTEYLVSSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGC 110
Query: 659 SVARSHVWSGTRPGMNGPLEGYVRARS 739
VA+ HV G + ++G +E + + S
Sbjct: 111 QVAKQHVRDGRKESLDGFVETFKKELS 137
>BC112074-1|AAI12075.1| 347|Homo sapiens REXO1L2P protein protein.
Length = 347
Score = 64.5 bits (150), Expect = 4e-10
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Frame = +2
Query: 500 DAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSSD-------SRYACCKSMLGSRGC 658
D+ +C RC + ++ G V+++ C YHWGRV S S+Y CC + GS GC
Sbjct: 80 DSSCRVCCRCGTEYLVSSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGC 139
Query: 659 SVARSHVWSGTRPGMNGPLEGYVRARS 739
VA+ HV G + ++G +E + + S
Sbjct: 140 QVAKQHVRDGRKESLDGFVETFKKELS 166
>AF495523-1|AAN77012.1| 318|Homo sapiens exonuclease GOR protein.
Length = 318
Score = 64.5 bits (150), Expect = 4e-10
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Frame = +2
Query: 500 DAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSSD-------SRYACCKSMLGSRGC 658
D+ +C RC + ++ G V+++ C YHWGRV S S+Y CC + GS GC
Sbjct: 51 DSSCRVCCRCGTEYLVSSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGC 110
Query: 659 SVARSHVWSGTRPGMNGPLEGYVRARS 739
VA+ HV G + ++G +E + + S
Sbjct: 111 QVAKQHVRDGRKESLDGFVETFKKELS 137
>BC032244-1|AAH32244.1| 1221|Homo sapiens REX1, RNA exonuclease 1
homolog (S. cerevisiae) protein.
Length = 1221
Score = 59.3 bits (137), Expect = 1e-08
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Frame = +2
Query: 518 CVRCDKMFRMTRDGEYVKEETCLYHWGRVSS-------DSRYACCKSMLGSRGCSVARSH 676
C RC + ++ G +++E C YHWGR+ +++Y CC + GS GC VA+ H
Sbjct: 973 CCRCGTEYLVSSSGRCIRDEECYYHWGRLRRNRVAGGWETQYMCCSAAAGSVGCQVAKQH 1032
Query: 677 VWSGTRPGMNG 709
V G + + G
Sbjct: 1033 VQDGRKERLEG 1043
>AB032964-1|BAA86452.1| 1239|Homo sapiens KIAA1138 protein protein.
Length = 1239
Score = 59.3 bits (137), Expect = 1e-08
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Frame = +2
Query: 518 CVRCDKMFRMTRDGEYVKEETCLYHWGRVSS-------DSRYACCKSMLGSRGCSVARSH 676
C RC + ++ G +++E C YHWGR+ +++Y CC + GS GC VA+ H
Sbjct: 991 CCRCGTEYLVSSSGRCIRDEECYYHWGRLRRNRVAGGWETQYMCCSAAAGSVGCQVAKQH 1050
Query: 677 VWSGTRPGMNG 709
V G + + G
Sbjct: 1051 VQDGRKERLEG 1061
>AK027872-1|BAB55422.1| 509|Homo sapiens protein ( Homo sapiens
cDNA FLJ14966 fis, clone THYRO1000034, weakly similar to
TRICHOHYALIN. ).
Length = 509
Score = 31.5 bits (68), Expect = 3.3
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +2
Query: 371 PPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFR 544
PPP P P T ++ F +Q S ST S +DEE D L ++ K R
Sbjct: 277 PPPPPPPPTAGGADSKNFPLRAQVTEASSSASSTSSSSADEEFDPQLSLQLKEKKTLR 334
>AF103426-1|AAD19426.1| 104|Homo sapiens immunoglobulin kappa light
chain variable region protein.
Length = 104
Score = 31.5 bits (68), Expect = 3.3
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 32 ARTSNSSSALVFRLYVYTSQPRN--MHFCIQFHDW 130
AR S S S F L + + QP + +++C Q+HDW
Sbjct: 57 ARFSGSGSGTEFTLTITSLQPEDFAVYYCQQYHDW 91
>AK123671-1|BAC85674.1| 520|Homo sapiens protein ( Homo sapiens
cDNA FLJ41677 fis, clone HCASM2002918. ).
Length = 520
Score = 31.1 bits (67), Expect = 4.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 371 PPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEAD 502
PPP P P T ++ F +Q S ST S +DEE D
Sbjct: 464 PPPPPPPPTAGGADSKNFPLRAQVTEASSSASSTSSSSADEEFD 507
>BC146775-1|AAI46776.1| 1320|Homo sapiens TNRC15 protein protein.
Length = 1320
Score = 30.7 bits (66), Expect = 5.8
Identities = 26/78 (33%), Positives = 36/78 (46%)
Frame = +2
Query: 323 PLEIEPNSTKAVVYINPPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEAD 502
PL P+ T + + I PPP P P T P P G G GS+ + P DEE
Sbjct: 457 PLSQIPSDTASPLLILPPPVPNPSPTL---RPVETP-VVGAPGMGSVSTEP---DDEE-- 507
Query: 503 AVEHLCVRCDKMFRMTRD 556
++HL + +KM +D
Sbjct: 508 GLKHLEQQAEKMVAYLQD 525
>AY176045-1|AAO46889.1| 1299|Homo sapiens Grb10 interacting GYF
protein 2 protein.
Length = 1299
Score = 30.7 bits (66), Expect = 5.8
Identities = 26/78 (33%), Positives = 36/78 (46%)
Frame = +2
Query: 323 PLEIEPNSTKAVVYINPPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEAD 502
PL P+ T + + I PPP P P T P P G G GS+ + P DEE
Sbjct: 436 PLSQIPSDTASPLLILPPPVPNPSPTL---RPVETP-VVGAPGMGSVSTEP---DDEE-- 486
Query: 503 AVEHLCVRCDKMFRMTRD 556
++HL + +KM +D
Sbjct: 487 GLKHLEQQAEKMVAYLQD 504
>AK092764-1|BAC03970.1| 575|Homo sapiens protein ( Homo sapiens
cDNA FLJ35445 fis, clone SMINT2003551, weakly similar to
Drosophila melanogaster La related protein (larp) mRNA.
).
Length = 575
Score = 30.7 bits (66), Expect = 5.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 371 PPPRPRPMTTWD--VNAPEFVPGSQGDSGRGSLGSTPRSDS 487
PPPR P T + ++ PEFVPG S S ++PR S
Sbjct: 253 PPPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGS 293
>AK001739-1|BAA91873.1| 1100|Homo sapiens protein ( Homo sapiens
cDNA FLJ10877 fis, clone NT2RP4001861. ).
Length = 1100
Score = 30.7 bits (66), Expect = 5.8
Identities = 26/78 (33%), Positives = 36/78 (46%)
Frame = +2
Query: 323 PLEIEPNSTKAVVYINPPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEAD 502
PL P+ T + + I PPP P P T P P G G GS+ + P DEE
Sbjct: 436 PLSQIPSDTASPLLILPPPVPNPSPTL---RPVETP-VVGAPGMGSVSTEP---DDEE-- 486
Query: 503 AVEHLCVRCDKMFRMTRD 556
++HL + +KM +D
Sbjct: 487 GLKHLEQQAEKMVAYLQD 504
>AK001240-1|BAA91576.1| 328|Homo sapiens protein ( Homo sapiens
cDNA FLJ10378 fis, clone NT2RM2002004, weakly similar to
LA PROTEIN HOMOLOG. ).
Length = 328
Score = 30.7 bits (66), Expect = 5.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 371 PPPRPRPMTTWD--VNAPEFVPGSQGDSGRGSLGSTPRSDS 487
PPPR P T + ++ PEFVPG S S ++PR S
Sbjct: 106 PPPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGS 146
>AB014542-1|BAA31617.2| 1329|Homo sapiens KIAA0642 protein protein.
Length = 1329
Score = 30.7 bits (66), Expect = 5.8
Identities = 26/78 (33%), Positives = 36/78 (46%)
Frame = +2
Query: 323 PLEIEPNSTKAVVYINPPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEAD 502
PL P+ T + + I PPP P P T P P G G GS+ + P DEE
Sbjct: 466 PLSQIPSDTASPLLILPPPVPNPSPTL---RPVETP-VVGAPGMGSVSTEP---DDEE-- 516
Query: 503 AVEHLCVRCDKMFRMTRD 556
++HL + +KM +D
Sbjct: 517 GLKHLEQQAEKMVAYLQD 534
>AB011174-1|BAA25528.1| 962|Homo sapiens KIAA0602 protein protein.
Length = 962
Score = 30.3 bits (65), Expect = 7.7
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 371 PPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPR 478
PPP RP V P PG +G G G++ R
Sbjct: 29 PPPSARPARPPRVRGPAAAPGRRGSGGAGAMAERGR 64
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,940,713
Number of Sequences: 237096
Number of extensions: 2601944
Number of successful extensions: 14359
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14351
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -