Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4c13
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-27|CAB60521.1| 365|Caenorhabditis elegans Hypothetical... 38 0.010
AC006620-4|AAF39778.1| 305|Caenorhabditis elegans Hypothetical ... 38 0.010
AL021497-10|CAD56614.1| 490|Caenorhabditis elegans Hypothetical... 33 0.16
AL021497-9|CAA16397.1| 487|Caenorhabditis elegans Hypothetical ... 33 0.16
U39850-9|AAM45371.1| 440|Caenorhabditis elegans Polyq (poly glu... 31 1.1
U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly glu... 31 1.1
U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly glu... 31 1.1
U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly glu... 31 1.1
U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly glu... 31 1.1
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 31 1.1
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 8.1
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 28 8.1
>AL132860-27|CAB60521.1| 365|Caenorhabditis elegans Hypothetical
protein Y56A3A.33 protein.
Length = 365
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +2
Query: 518 CVRCDKMFRMTRDGEYVKEETCLYH----WGRVSSDSRYACCKSMLG--SRGCSVARSHV 679
C RC K F + DG + C+YH W ++ CC + G ++GC V HV
Sbjct: 94 CSRCSKGFYLNPDGT-ANAQKCVYHHRAKWDPLTGKKHLPCCSAKPGPSTKGCLVEDRHV 152
Query: 680 WS 685
+S
Sbjct: 153 FS 154
>AC006620-4|AAF39778.1| 305|Caenorhabditis elegans Hypothetical
protein C51G7.1 protein.
Length = 305
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +2
Query: 518 CVRCDKMFRMTRDGEYVKEETCLYH----WGRVSSDSRYACCKSMLG--SRGCSVARSHV 679
C RC K F + DG + C+YH W ++ CC + G ++GC V HV
Sbjct: 57 CSRCSKGFYLNPDGT-ANAQKCVYHHRAKWDPLTGKKHLPCCSAKPGPSTKGCLVEDRHV 115
Query: 680 WS 685
+S
Sbjct: 116 FS 117
>AL021497-10|CAD56614.1| 490|Caenorhabditis elegans Hypothetical
protein Y51A2D.13b protein.
Length = 490
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 290 LSPKRMWTLGYPLEIEPNSTKAVVYINPPPRP--RPMTTWDVNA 415
L K + YPLE++ KA VYI P+ P TWD++A
Sbjct: 246 LKVKAAYNKEYPLEMQVQGAKAQVYIATSPKELNNPRRTWDLDA 289
>AL021497-9|CAA16397.1| 487|Caenorhabditis elegans Hypothetical
protein Y51A2D.13a protein.
Length = 487
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 290 LSPKRMWTLGYPLEIEPNSTKAVVYINPPPRP--RPMTTWDVNA 415
L K + YPLE++ KA VYI P+ P TWD++A
Sbjct: 243 LKVKAAYNKEYPLEMQVQGAKAQVYIATSPKELNNPRRTWDLDA 286
>U39850-9|AAM45371.1| 440|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform f
protein.
Length = 440
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Frame = +2
Query: 518 CVRCDKMFRMTRDGEYVKEE-TCLYHWGRVSSD-------SRYACCKSMLG-SRGCSVAR 670
C RC+K F+++ +G ++ C YH V+ + RY+CC + GC +
Sbjct: 181 CSRCNKEFKLSPNGTMIRSTGICRYHNRGVAINGKRDTFRKRYSCCNEEFNVALGCKFSD 240
Query: 671 SHV 679
HV
Sbjct: 241 VHV 243
>U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform d
protein.
Length = 558
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Frame = +2
Query: 518 CVRCDKMFRMTRDGEYVKEE-TCLYHWGRVSSD-------SRYACCKSMLG-SRGCSVAR 670
C RC+K F+++ +G ++ C YH V+ + RY+CC + GC +
Sbjct: 299 CSRCNKEFKLSPNGTMIRSTGICRYHNRGVAINGKRDTFRKRYSCCNEEFNVALGCKFSD 358
Query: 671 SHV 679
HV
Sbjct: 359 VHV 361
>U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform e
protein.
Length = 573
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Frame = +2
Query: 518 CVRCDKMFRMTRDGEYVKEE-TCLYHWGRVSSD-------SRYACCKSMLG-SRGCSVAR 670
C RC+K F+++ +G ++ C YH V+ + RY+CC + GC +
Sbjct: 314 CSRCNKEFKLSPNGTMIRSTGICRYHNRGVAINGKRDTFRKRYSCCNEEFNVALGCKFSD 373
Query: 671 SHV 679
HV
Sbjct: 374 VHV 376
>U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform c
protein.
Length = 670
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Frame = +2
Query: 518 CVRCDKMFRMTRDGEYVKEE-TCLYHWGRVSSD-------SRYACCKSMLG-SRGCSVAR 670
C RC+K F+++ +G ++ C YH V+ + RY+CC + GC +
Sbjct: 411 CSRCNKEFKLSPNGTMIRSTGICRYHNRGVAINGKRDTFRKRYSCCNEEFNVALGCKFSD 470
Query: 671 SHV 679
HV
Sbjct: 471 VHV 473
>U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform g
protein.
Length = 672
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Frame = +2
Query: 518 CVRCDKMFRMTRDGEYVKEE-TCLYHWGRVSSD-------SRYACCKSMLG-SRGCSVAR 670
C RC+K F+++ +G ++ C YH V+ + RY+CC + GC +
Sbjct: 413 CSRCNKEFKLSPNGTMIRSTGICRYHNRGVAINGKRDTFRKRYSCCNEEFNVALGCKFSD 472
Query: 671 SHV 679
HV
Sbjct: 473 VHV 475
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Frame = +2
Query: 518 CVRCDKMFRMTRDGEYVKEE-TCLYHWGRVSSD-------SRYACCKSMLG-SRGCSVAR 670
C RC+K F+++ +G ++ C YH V+ + RY+CC + GC +
Sbjct: 1388 CSRCNKEFKLSPNGTMIRSTGICRYHNRGVAINGKRDTFRKRYSCCNEEFNVALGCKFSD 1447
Query: 671 SHV 679
HV
Sbjct: 1448 VHV 1450
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +2
Query: 317 GYPLEIEPNSTKAVVYINPPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDS 487
G+P K I PPP +P AP +PG QGD G P SD+
Sbjct: 127 GFPGNPGKAPQKPCEEITPPPC-KPCPQGPPGAPG-LPGDQGDKGEAGQPGQPGSDA 181
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +2
Query: 317 GYPLEIEPNSTKAVVYINPPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDS 487
G+P K I PPP +P AP +PG QGD G P SD+
Sbjct: 127 GFPGNPGKAPQKPCEEITPPPC-KPCPQGPPGAPG-LPGDQGDKGEAGQPGQPGSDA 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,261,520
Number of Sequences: 27780
Number of extensions: 379572
Number of successful extensions: 1323
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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