Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c11
         (252 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit...    70   4e-14
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    29   0.094
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    24   2.7  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    24   3.5  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    23   6.2  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    23   6.2  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    23   8.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    23   8.2  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    23   8.2  

>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
           Arc21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 70.1 bits (164), Expect = 4e-14
 Identities = 31/75 (41%), Positives = 49/75 (65%)
 Frame = +1

Query: 1   YXTLYVSECLRRLQKCSXKNQGQQEMYMLAISXFDIPGEPGFPLNSVYAXPTSQQESDLM 180
           Y TL++SECL R+   + ++  ++++  LA+  F IPG  GFPLN++YA P S Q++++M
Sbjct: 72  YGTLFISECLGRVNGLNYRD-AERQLNSLALENFSIPGSAGFPLNALYAPPLSPQDAEIM 130

Query: 181 RQYLQQLRHXTGTRV 225
           R YL Q R     R+
Sbjct: 131 RTYLTQFRQELAYRL 145


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 29.1 bits (62), Expect = 0.094
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 38  CRSVPAKIKVNKRCTCWLYPXLTF 109
           CR++  ++K N +C C L P L F
Sbjct: 45  CRAIKQQLKSNLKCVCHLQPFLPF 68


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +1

Query: 13  YVSECLRRLQKCSXKNQGQQEMYMLAISXFDIPGEPGFPLNSVYAXPTSQQESDLMRQYL 192
           Y  E L    + + K Q     Y +    +     PG+PLN V+    S+ E  L    L
Sbjct: 42  YPEELLFDDDEYTAKTQYDGPRYAMPTMFYPNKPTPGWPLNYVFGNERSRFEKILSNFVL 101

Query: 193 QQL 201
           + L
Sbjct: 102 RNL 104


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 86  WLYPXLTFLGNQVSRSTPYM 145
           ++Y  L F+G  V+R TPY+
Sbjct: 265 FVYQCLLFVGKCVNRVTPYL 284


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 106 IPGEPGFPLNSVYAXPTSQQESDLM 180
           +P E   P NS    PT   E D++
Sbjct: 269 LPSETSVPANSTLQVPTENVEVDVL 293


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 124 FPLNSVYAXPTSQQESDLMRQYLQQLRHXTGT 219
           F L      P SQ+ +    Q+L   +H +GT
Sbjct: 461 FDLGKEMGNPNSQRPTQAFIQFLTYYQHSSGT 492


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 153 YQSARI*FNEAVFTTIET 206
           Y+SA + FN+  FT + T
Sbjct: 286 YESANVSFNDTSFTNVPT 303


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 106 IPGEPGFPLNSVYAXPTS 159
           IP  PG P +SV A PT+
Sbjct: 885 IPVNPGNPSSSVSAPPTT 902


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 154  TSQQESDLMRQYLQQLRHXTGTRVCEKXI 240
            T   E   +R  +Q  RH TG++V ++ +
Sbjct: 1508 TDAAEIAFLRGLIQDHRHYTGSQVADRIL 1536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 882,140
Number of Sequences: 5004
Number of extensions: 12745
Number of successful extensions: 30
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)