Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c11
         (252 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0191 + 7642942-7642944,7643405-7643513,7643578-7643886,764...    67   2e-12
08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799     27   2.8  
08_02_0338 + 15916813-15917180,15917396-15917588,15917778-15917783     27   2.8  
08_02_0334 + 15867947-15868314,15868530-15868722,15868912-15868917     27   2.8  
08_01_0101 + 725972-726200,726407-726675,726927-727049,727742-72...    26   3.7  
01_05_0770 - 25052100-25052525,25052718-25053042,25053220-250534...    25   6.4  

>02_02_0191 +
           7642942-7642944,7643405-7643513,7643578-7643886,
           7644697-7644839
          Length = 187

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 28/75 (37%), Positives = 45/75 (60%)
 Frame = +1

Query: 1   YXTLYVSECLRRLQKCSXKNQGQQEMYMLAISXFDIPGEPGFPLNSVYAXPTSQQESDLM 180
           Y T Y++  L+RL+ C     G + +  L +    +PGEPGFP   ++  P SQ+E++L+
Sbjct: 84  YLTFYINIALKRLEGCRTLAVGTKAIINLGLEKVPVPGEPGFPFPGLFTLPQSQEEAELL 143

Query: 181 RQYLQQLRHXTGTRV 225
           R YL+Q+R  T  R+
Sbjct: 144 RNYLKQIREETSGRL 158


>08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799
          Length = 188

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/66 (25%), Positives = 25/66 (37%)
 Frame = +1

Query: 43  KCSXKNQGQQEMYMLAISXFDIPGEPGFPLNSVYAXPTSQQESDLMRQYLQQLRHXTGTR 222
           KCS +N+    MY+        P  PG P  + Y    S +     + Y+      TGT 
Sbjct: 34  KCSQENETSLHMYL-----HQFPALPGVPNRNEYGVINSTEPIGFGQMYVHDWLLTTGTS 88

Query: 223 VCEKXI 240
             E  +
Sbjct: 89  ANENVV 94


>08_02_0338 + 15916813-15917180,15917396-15917588,15917778-15917783
          Length = 188

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/66 (25%), Positives = 25/66 (37%)
 Frame = +1

Query: 43  KCSXKNQGQQEMYMLAISXFDIPGEPGFPLNSVYAXPTSQQESDLMRQYLQQLRHXTGTR 222
           KCS +N+    MY+        P  PG P  + Y    S +     + Y+      TGT 
Sbjct: 34  KCSQENETSLHMYL-----HQFPALPGVPNRNEYGVINSTEPIGFGQMYVHDWLLTTGTS 88

Query: 223 VCEKXI 240
             E  +
Sbjct: 89  ANENVV 94


>08_02_0334 + 15867947-15868314,15868530-15868722,15868912-15868917
          Length = 188

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/66 (25%), Positives = 25/66 (37%)
 Frame = +1

Query: 43  KCSXKNQGQQEMYMLAISXFDIPGEPGFPLNSVYAXPTSQQESDLMRQYLQQLRHXTGTR 222
           KCS +N+    MY+        P  PG P  + Y    S +     + Y+      TGT 
Sbjct: 34  KCSQENETSLHMYL-----HQFPALPGVPNRNEYGVINSTEPVGFGQMYVHDWLLTTGTS 88

Query: 223 VCEKXI 240
             E  +
Sbjct: 89  ANENVV 94


>08_01_0101 +
           725972-726200,726407-726675,726927-727049,727742-728248
          Length = 375

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 190 LQQLRHXTGTRVCEKXICH 246
           LQ+ RH T +RVC + +CH
Sbjct: 306 LQRRRHSTSSRVCSR-VCH 323


>01_05_0770 -
           25052100-25052525,25052718-25053042,25053220-25053464,
           25053582-25054061
          Length = 491

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 67  QQEMYMLAISXFDIPGEPGFPL-NSVYAXPTSQQESDLMRQYLQQLRH 207
           QQE++M AI    IPG    P  N+        +   ++R  +Q+  H
Sbjct: 225 QQELFMGAIQKISIPGYMSLPTKNNRRMYQIKNEVESIIRDLVQKRMH 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,513,977
Number of Sequences: 37544
Number of extensions: 77907
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)