Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c11
         (252 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-1|CAA21538.1|  183|Caenorhabditis elegans Hypothetical ...    86   4e-18
AL021475-1|CAA16312.1|  758|Caenorhabditis elegans Hypothetical ...    27   1.8  
AC024791-23|AAM81102.1|  346|Caenorhabditis elegans Rnp (rrm rna...    25   7.1  
AC024791-22|AAF60676.1|  339|Caenorhabditis elegans Rnp (rrm rna...    25   7.1  
AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna...    25   7.1  
Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AL032626-1|CAA21538.1|  183|Caenorhabditis elegans Hypothetical
           protein Y37D8A.1 protein.
          Length = 183

 Score = 85.8 bits (203), Expect = 4e-18
 Identities = 39/78 (50%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
 Frame = +1

Query: 1   YXTLYVSECLRRLQKCSXKNQGQQEMYMLAISXF-DIPGEPGFPLNSVYAXPTSQQESDL 177
           Y   Y++ECLR+LQK   K  GQ++++ LA+S    IPGE GFPLNS+Y  P S+ + D 
Sbjct: 72  YLIFYITECLRKLQKSPNKIAGQKDLHALALSHLLPIPGENGFPLNSMYKAPQSKPDEDE 131

Query: 178 MRQYLQQLRHXTGTRVCE 231
           MR YLQQ+R   G R+C+
Sbjct: 132 MRAYLQQIRQEIGARLCD 149


>AL021475-1|CAA16312.1|  758|Caenorhabditis elegans Hypothetical
           protein Y32F6B.1 protein.
          Length = 758

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 127 PLNSVYAXPTSQQESDLMRQYLQQLRHXTGTRVCE 231
           P N V       ++SDL+++Y++   +  G+ +C+
Sbjct: 140 PKNQVVMNYEGDEKSDLLQKYVEYCHYHKGSEICK 174


>AC024791-23|AAM81102.1|  346|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform c protein.
          Length = 346

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 16  VSECLRRLQKCSXKNQGQQEMYMLAIS 96
           + + L R QK   +NQ +Q+MY  A+S
Sbjct: 73  IKQILLRQQKQQQENQQRQQMYSQALS 99


>AC024791-22|AAF60676.1|  339|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform a protein.
          Length = 339

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 16  VSECLRRLQKCSXKNQGQQEMYMLAIS 96
           + + L R QK   +NQ +Q+MY  A+S
Sbjct: 73  IKQILLRQQKQQQENQQRQQMYSQALS 99


>AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform b protein.
          Length = 749

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 16  VSECLRRLQKCSXKNQGQQEMYMLAIS 96
           + + L R QK   +NQ +Q+MY  A+S
Sbjct: 73  IKQILLRQQKQQQENQQRQQMYSQALS 99


>Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical
           protein F45G2.4 protein.
          Length = 292

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 6/26 (23%), Positives = 19/26 (73%)
 Frame = +1

Query: 130 LNSVYAXPTSQQESDLMRQYLQQLRH 207
           +NS+ +   ++++ D++ +++ QL+H
Sbjct: 240 INSIVSAQLNEKDDDVVERFISQLKH 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,003,411
Number of Sequences: 27780
Number of extensions: 75530
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)