Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c09
         (212 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41671 Cluster: Uncharacterized 18.7 kDa protein in HE6...    48   3e-05
UniRef50_Q64YZ0 Cluster: Putative uncharacterized protein; n=1; ...    31   3.9  
UniRef50_Q2AR41 Cluster: Phage minor structural protein, N-termi...    31   3.9  
UniRef50_A0BG38 Cluster: Chromosome undetermined scaffold_105, w...    31   5.1  
UniRef50_UPI0000DA2D5F Cluster: PREDICTED: similar to TBC1 domai...    31   6.7  

>UniRef50_P41671 Cluster: Uncharacterized 18.7 kDa protein in
           HE65-PK2 intergenic region; n=3;
           Nucleopolyhedrovirus|Rep: Uncharacterized 18.7 kDa
           protein in HE65-PK2 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 157

 Score = 48.4 bits (110), Expect = 3e-05
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +1

Query: 82  MHFTYWRMSEYFCTYEIF 135
           MHFTYWRMSEYFCTYEIF
Sbjct: 1   MHFTYWRMSEYFCTYEIF 18


>UniRef50_Q64YZ0 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides fragilis|Rep: Putative uncharacterized
           protein - Bacteroides fragilis
          Length = 353

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 85  HFTYWRMSEYFCTYEIFCCIRNIDVALYSLI 177
           +F + R+SEY  TY  FC  + ID   Y+L+
Sbjct: 132 NFDFERISEYKSTYTDFCPFKPIDTGFYNLL 162


>UniRef50_Q2AR41 Cluster: Phage minor structural protein, N-terminal;
            n=1; Bacillus weihenstephanensis KBAB4|Rep: Phage minor
            structural protein, N-terminal - Bacillus
            weihenstephanensis KBAB4
          Length = 1564

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 121  YKNTRTFSNK*--NAFCYYTVVSSSDYCNSVHVC 26
            Y NT T  N    N FCY+ +  + DY +++ VC
Sbjct: 1421 YSNTFTIPNNFPDNGFCYFDIYGAGDYASNMAVC 1454


>UniRef50_A0BG38 Cluster: Chromosome undetermined scaffold_105,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_105,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 603

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 58  KKQQYNSKMHFTYWRMSEYFCTY 126
           +K+  N+++ FTYW+ ++ FCTY
Sbjct: 466 QKKDENNQIVFTYWQYADPFCTY 488


>UniRef50_UPI0000DA2D5F Cluster: PREDICTED: similar to TBC1 domain
           family member 22A; n=1; Rattus norvegicus|Rep:
           PREDICTED: similar to TBC1 domain family member 22A -
           Rattus norvegicus
          Length = 310

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
 Frame = -2

Query: 73  YTVV---SSSDYCNSVHVCKLDR 14
           YTV+   S SDYC + HVC L+R
Sbjct: 205 YTVIVQKSGSDYCRAAHVCDLER 227


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,061,183
Number of Sequences: 1657284
Number of extensions: 2643388
Number of successful extensions: 6036
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6036
length of database: 575,637,011
effective HSP length: 49
effective length of database: 494,430,095
effective search space used: 10383031995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)