Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c09
         (212 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   1.4  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    24   2.4  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    23   4.2  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    23   4.2  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    23   7.3  
SPAC31A2.13c |sft1||SNARE Sft1|Schizosaccharomyces pombe|chr 1||...    23   7.3  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    23   7.3  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    22   9.6  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    22   9.6  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    22   9.6  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 91  TYWRMSEYFCTYEIFCCIRNI 153
           TYW    Y CT+   CCI  I
Sbjct: 486 TYWVTLSYLCTFT--CCIMTI 504


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +2

Query: 2   SWCTSIKFTYVYTIAIITRRNNSIIAKCILLIGECPSI 115
           +WC  I+      I  I +  + ++ + +LL+  CP +
Sbjct: 853 AWCPKIRRIIFDEIHCIGQMEDGLVEEQLLLLAPCPIV 890


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 97  NK*NAFCYYTVVSSSDYCNSVHVCKLDRCAP 5
           NK +A    TV+ S++ CN +    +DR  P
Sbjct: 113 NKKDALLRGTVLESNEDCNEITQLWIDRIEP 143


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = -2

Query: 106 TFSNK*NAFCYYTVVSSSDYCNSVHVCKLD 17
           +F+ +  A   + ++   +YC+ +H+C  D
Sbjct: 104 SFTEQDTAKFLWQILCGLEYCHKLHICHRD 133


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 118 KNTRTFSNK*NAFCYYTVVSSSDYCNSVHVCKLDRC 11
           + +  F+++   + + T+ S SD C S H   +D C
Sbjct: 733 ERSSAFNDEQFNYVFNTLTSISDQCISSHKYCMDAC 768


>SPAC31A2.13c |sft1||SNARE Sft1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 91

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 175 LKNTTPHLYS*YNKISRTYKNTRTFSNK*NA 83
           LKN T  +YS  N  +R  + T +FS   N+
Sbjct: 19  LKNVTYDIYSRANDYTRIDRATESFSGLSNS 49


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 153 YIPNTTKYLVRTKILG 106
           Y+PN   YL++ K +G
Sbjct: 67  YVPNLASYLLKVKNIG 82


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 183 FNN*RIQRHIYIPNTTKYLVRTKILGH 103
           FNN  IQ  I +PN ++  V   + G+
Sbjct: 139 FNNLLIQFQIQVPNVSRRTVYRHLKGY 165


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 109 EYFCTYEIFCCIRNIDVAL 165
           +Y  T  +FC  RNI++ +
Sbjct: 67  QYLVTRHVFCVQRNINIGV 85


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -2

Query: 142 YNKISRTYKNTRTFSNK*NAFCYYTVVSSSDYCN 41
           Y     TY  T T  +   AFC   + S S Y N
Sbjct: 384 YEYTRPTYGRTDTSCSAPGAFCSTQINSPSSYIN 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 804,373
Number of Sequences: 5004
Number of extensions: 12986
Number of successful extensions: 36
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)