Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c09
         (212 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977...    27   2.1  
03_06_0068 + 31439486-31439692,31441378-31441452,31441540-314416...    26   3.6  
03_05_0297 - 22870052-22870342,22870436-22870534,22870624-228707...    26   4.8  
03_03_0209 - 15461255-15461542,15461666-15461764,15461868-154619...    25   8.3  

>03_06_0505 -
           34397054-34397087,34397127-34397474,34397650-34397757,
           34397847-34398161,34399027-34399442,34399531-34400946
          Length = 878

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +2

Query: 2   SWCTSIKFTYVYTIAIITRRNNSIIAKCILLIGECPS 112
           SWC   +  +   I ++ R+  +++ KC+ +  + PS
Sbjct: 128 SWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPS 164


>03_06_0068 +
           31439486-31439692,31441378-31441452,31441540-31441641,
           31441739-31441792,31441888-31441980,31442224-31442316,
           31443007-31443111,31443217-31443315,31444165-31444452
          Length = 371

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 127 RTYKNTRTFSNK*NAFCYYTVVSSSDYCNSVHVCKLD 17
           R  KN R FS     + +  ++S   YC+S+ VC  D
Sbjct: 117 RICKNVR-FSEDEARYFFQQLISGVSYCHSMQVCHRD 152


>03_05_0297 -
           22870052-22870342,22870436-22870534,22870624-22870728,
           22870898-22870990,22871206-22871298,22871449-22871502,
           22871604-22871957
          Length = 362

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 115 NTRTFSNK*NAFCYYTVVSSSDYCNSVHVCKLD 17
           N   FS     F +  ++S   YC+S+ VC  D
Sbjct: 110 NAGRFSEDEARFFFQQLISGVSYCHSMQVCHRD 142


>03_03_0209 -
           15461255-15461542,15461666-15461764,15461868-15461972,
           15462076-15462168,15462276-15462368,15462453-15462506,
           15463759-15463833,15464810-15464929
          Length = 308

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 127 RTYKNTRTFSNK*NAFCYYTVVSSSDYCNSVHVCKLD 17
           R+ K+      K   F +  ++S   YC+S+ VC  D
Sbjct: 53  RSLKHPNIIRFKEARFFFQQLISGVSYCHSMQVCHRD 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,453,145
Number of Sequences: 37544
Number of extensions: 61127
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)