Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c09
         (212 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   1.3  
SB_14447| Best HMM Match : EutH (HMM E-Value=1.1)                      27   2.3  
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                26   4.1  
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_22625| Best HMM Match : GIY-YIG (HMM E-Value=0.38)                  26   5.4  
SB_14722| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_13140| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-15)                 25   9.4  
SB_22014| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)                 25   9.4  
SB_14217| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  

>SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 7   VHIYQVYIRVHYCNNH*KKQQYNSKMHFT 93
           +HIY  +IRVH  + H +   YN+   +T
Sbjct: 115 IHIYDKHIRVHIYDKHIRVHIYNNTYVYT 143



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 7   VHIYQVYIRVHYCNNH*KKQQYN 75
           VHIY  +IR+H  + H +   YN
Sbjct: 70  VHIYDKHIRIHIYDKHIRVHIYN 92



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 7   VHIYQVYIRVHYCNNH*KKQQYN 75
           +HIY  +IRVH  N H +   Y+
Sbjct: 79  IHIYDKHIRVHIYNKHIRVHIYD 101



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 7   VHIYQVYIRVHYCNNH*KKQQYNSKMHFT 93
           VHIY  +IRVH  + H +   Y++   +T
Sbjct: 178 VHIYDKHIRVHIYDKHIRVHIYDNTYVYT 206


>SB_14447| Best HMM Match : EutH (HMM E-Value=1.1)
          Length = 418

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 23  FTYVYTIAIITRRNNSIIAK 82
           F Y    A++TRR NS+IAK
Sbjct: 173 FVYPVFFAVLTRRRNSLIAK 192


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 11   TSIKFTYVYTIAIITRRNNSIIAKCILLIGECPSIFVRTR 130
            T I    + TI II   NN+ I    ++ G+C  IF R R
Sbjct: 1257 TIIVIIIIITIIIINNNNNTTIIVDFVIFGDC-VIFQRLR 1295


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 142  YNKIS-RTYKNTRTFSNK*NAFCYYTVVSSSDYCNSV 35
            YN I  R  +N   ++ K + +CY  ++S S +C+ V
Sbjct: 1345 YNPIKYRCARNKYIYNPKTHKYCYGRIISISAHCSHV 1381


>SB_22625| Best HMM Match : GIY-YIG (HMM E-Value=0.38)
          Length = 382

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 20  KFTYVYTIAIITRRNNSIIAKCILLIGECPSIFVRTRYFV 139
           KF       I  + NNS   KC      C S FV++R+F+
Sbjct: 242 KFKQRAATEISNQENNSGCFKCGKKCDLCSSYFVQSRHFI 281


>SB_14722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 81  NAFYLLENVRVFLYVRDILLY*EYRCGVVFFNY*IK-QNDII 203
           N   +L N+RV   +R  +L   Y   + FFNY  K + D+I
Sbjct: 1   NKIIILRNIRVNFEIRLRVLRFNYTSFLYFFNYSRKEEKDVI 42


>SB_13140| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-15)
          Length = 987

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 106 SEYFCTYEIFCC 141
           S  +CTY IFCC
Sbjct: 311 SAKYCTYTIFCC 322


>SB_22014| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)
          Length = 497

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 76  YYTVVSSSDYCNSVHVCKLD 17
           YYTVVS +D    + VC+L+
Sbjct: 295 YYTVVSITDDAEPLFVCELE 314


>SB_14217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 81  NAFYLLENVRVFLYVRDILLY*EYRCGVVFFNY*IK-QNDII 203
           N   +L N+RV   +R  +L   Y   + FFNY  K + D+I
Sbjct: 1   NKIIILRNIRVNFEIRLRVLRFNYTSFLYFFNYSRKEEKDVI 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,793,130
Number of Sequences: 59808
Number of extensions: 97066
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 16,821,457
effective HSP length: 49
effective length of database: 13,890,865
effective search space used: 291708165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)