Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c09
         (212 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67755-6|CAA91759.1|  311|Caenorhabditis elegans Hypothetical pr...    28   0.79 
AC006714-11|AAN65282.3|  306|Caenorhabditis elegans F-box a prot...    25   5.5  
Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical p...    25   7.3  
U97009-5|AAC69036.2|  505|Caenorhabditis elegans Nuclear hormone...    25   9.7  

>Z67755-6|CAA91759.1|  311|Caenorhabditis elegans Hypothetical
           protein F54F7.6 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 14  SIKFTYVYTIAIITRRNNSIIAKCILLIGECPSIFVRTRYFVV 142
           ++ FT + T  ++ R  N++  +CI+ + E P  F  +  FVV
Sbjct: 48  TVVFTQLNTTNVVERLGNNLF-RCIVKVNELPRNFQHSHNFVV 89


>AC006714-11|AAN65282.3|  306|Caenorhabditis elegans F-box a protein
           protein 61 protein.
          Length = 306

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 67  QYNSKMHFTYWRMSEYFCTYE 129
           Q+N   H   W+ ++ FC Y+
Sbjct: 183 QFNRLTHLAQWKKAQSFCIYD 203


>Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical
           protein T11F9.18 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 74  IAKCILLIGECPSIFVRTR 130
           IA C +LI +CPS F + R
Sbjct: 29  IATCFILIWKCPSFFNQYR 47


>U97009-5|AAC69036.2|  505|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 220 protein.
          Length = 505

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 103 MSEYFCTYEIFCCIRNID 156
           M   F +Y +FCC+R  D
Sbjct: 73  MRSLFASYHLFCCLRLSD 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,419,481
Number of Sequences: 27780
Number of extensions: 71140
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)