Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4c01
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 239 9e-64
02_05_0416 + 28791512-28792012 236 1e-62
11_04_0079 - 13284869-13284929,13285518-13285639,13285749-132858... 31 0.89
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 29 2.1
03_06_0776 - 36176390-36177589 29 3.6
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338 28 4.8
12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427... 28 6.3
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 28 6.3
02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833... 28 6.3
08_02_0208 - 14318485-14319283,14319704-14320170 27 8.3
07_03_0574 - 19629875-19631032 27 8.3
07_03_0313 + 16620817-16621515 27 8.3
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 8.3
>04_04_1026 + 30214437-30214937
Length = 166
Score = 239 bits (586), Expect = 9e-64
Identities = 114/163 (69%), Positives = 140/163 (85%), Gaps = 1/163 (0%)
Frame = +3
Query: 72 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 248
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 249 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 428
V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA+IMRNR
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120
Query: 429 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 557
SMA+ ++G+VKEILGT SVGCTV+G+ P DL +I+ G + I
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163
>02_05_0416 + 28791512-28792012
Length = 166
Score = 236 bits (577), Expect = 1e-62
Identities = 112/163 (68%), Positives = 139/163 (85%), Gaps = 1/163 (0%)
Frame = +3
Query: 72 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 248
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 249 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 428
V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA++MR R
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPR 120
Query: 429 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 557
SMA+ ++G+VKEILGT SVGCTV+G+ P DL +I+ G + I
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163
>11_04_0079 -
13284869-13284929,13285518-13285639,13285749-13285820,
13286048-13286200,13289510-13289709,13289745-13289947,
13289991-13290181
Length = 333
Score = 30.7 bits (66), Expect = 0.89
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 550 KAPLLMSSIRSCGGLPSTVHPTDCAVPRISF 458
+APL S+RSCG L + P + ++PR+ +
Sbjct: 120 QAPLSPKSVRSCGPLKLVIEPYNGSLPRLHY 150
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 228 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 356
W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 33 WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>03_06_0776 - 36176390-36177589
Length = 399
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 354 QKNIKHNGNISLEDVIGIAKIMRNRSMARY 443
+K+I++ G++ LE + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142
>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
Length = 740
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = -2
Query: 563 FINGQSSAVDVINKIMWRPALHSTSN*LCCAKNLFY*ARKVPGH*SVSHDLRNADYIFKG 384
F++ + + ++N I++RPA+ S + +C A +F A + L+ + YIF G
Sbjct: 412 FMSSIALIILLVNPILYRPAIRSYALSVCTAVGMF--ALMCAYAAGSTQHLKTSIYIF-G 468
Query: 383 DVAVVFDIFLLFTV 342
VA+V I +L +
Sbjct: 469 LVALVLFIMILVLI 482
>12_02_0178 -
14941342-14941391,14941909-14942002,14942498-14942716,
14943409-14943492,14943783-14944067,14944349-14944501,
14944618-14944740,14945429-14945495,14946122-14946309,
14947134-14947250,14947720-14947812,14948377-14948459,
14948565-14948610
Length = 533
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 359 KYQTQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRDSW 472
K+ + LP RCN+ C + + P PF S+ W
Sbjct: 145 KWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIRSREFLW 182
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 69 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 197
K+P + F N +KIV ++C G EV +G G+ +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412
>02_05_0528 -
29782382-29782864,29782994-29783092,29783319-29783387,
29783781-29783888,29783965-29784274,29784772-29784812,
29784886-29784942,29785290-29785448,29785587-29785655,
29785728-29785877,29785967-29786098,29786347-29786433,
29786516-29786686,29786760-29786960,29787348-29787416,
29787510-29787618,29787887-29788005,29788676-29788780,
29789377-29789755,29790022-29790150,29790223-29790402,
29791310-29791469,29791604-29791744,29791832-29792021,
29792100-29792161,29792879-29793107
Length = 1335
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 184 DRPRGPILGAKDDVAPTSPPTHRKFTILISFGSNL 80
D GP G DD + T P H + T I F N+
Sbjct: 646 DEDSGPRPGTSDDSSATKPAEHNESTAEILFNPNV 680
>08_02_0208 - 14318485-14319283,14319704-14320170
Length = 421
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 172 GPILGAKDDVAPTSPPTHRKFTILISFGSNLGGILL 65
G GA DD P P R + +SF +GG L+
Sbjct: 256 GDASGANDDNEPAGRPLKRSKKLRVSFRDQVGGELI 291
>07_03_0574 - 19629875-19631032
Length = 385
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 406 MPITSSREMLPLCLIFFCFLRSRG-GSLRALMIRAAAEGTTAIW 278
+P E++P C ++F F R+ G SL A + AA +W
Sbjct: 247 LPFAGKAELVPGCNLWFGFSRADGSSSLCAADLAAAPHRACGVW 290
>07_03_0313 + 16620817-16621515
Length = 232
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 235 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 98
PF +A++ D +LGAK D+ S P H K +L+
Sbjct: 15 PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 111 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 212
N +C G E G S AP++ PLG+ PK G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,767,734
Number of Sequences: 37544
Number of extensions: 362956
Number of successful extensions: 1021
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -