Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4c01
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)             279   2e-75
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)              29   2.8  
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       28   4.9  
SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)                     28   4.9  
SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)                      28   4.9  
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     28   4.9  
SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)                   28   6.4  
SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)                  27   8.5  
SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)                 27   8.5  
SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)                 27   8.5  
SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10)                  27   8.5  
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)                     27   8.5  
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)                  27   8.5  
SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5)                   27   8.5  
SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)              27   8.5  
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)                  27   8.5  

>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score =  279 bits (683), Expect = 2e-75
 Identities = 129/164 (78%), Positives = 149/164 (90%)
 Frame = +3

Query: 72  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 251
           MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT DWKGLKITV
Sbjct: 1   MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQDWKGLKITV 60

Query: 252 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 431
            LT+QNRQA+++VVPSA++LII+ALKEPPRDRKK KNIKHNGNI+L+DV  +AK+MR RS
Sbjct: 61  CLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVTNVAKVMRPRS 120

Query: 432 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 563
           MAR+LSG+VKEILGT QSVGCTV+G  PHD+ID INSG + I++
Sbjct: 121 MARHLSGTVKEILGTCQSVGCTVDGMAPHDVIDKINSGEIEIED 164


>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
          Length = 302

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 240 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKH 371
           ++ ++     RQ +   +PSA    IR  +E PR  +K  N+KH
Sbjct: 97  RVIIRAVGSRRQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 399 IGIAKIMRNRSMARYLSGS-VKEILGTAQSVGCTVEGRPP 515
           +G  K++++R       G  V+ + GT  S+ C VEG PP
Sbjct: 128 VGTHKLLKSRDPVIVTIGDKVETLTGTEVSIICPVEGLPP 167


>SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)
          Length = 671

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +3

Query: 144 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 314
           T  L P ++ PLGL PKK+  D  ++   S  KGL +   +++++   + A +  A + I
Sbjct: 369 TPPLVPFRVSPLGLVPKKLPGDFRLSHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 428


>SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)
          Length = 193

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 474 TAQSVGCTVEGRPPHDLIDDINSG 545
           T   + C VE  PPH++ D +N G
Sbjct: 150 TLNQLYCPVEPNPPHNMFDHVNLG 173


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -2

Query: 347 TVTRRLLKGSDDKGCC-----RGNNSYLGLSVLNCQLHSDLETLPVTCGLGNVITH 195
           +++  +  GSD+K CC      G  + LG+  +   +HSD++  P+   L  +  H
Sbjct: 108 SLSSSMFTGSDNKLCCFFLGQDGEKAMLGIVYVLTHVHSDIQFCPLLPVLAALFLH 163


>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +3

Query: 132  EVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAVVPS 299
            E+G T +    +  LG  PK V +D     +DW    +       +    IA+ PS
Sbjct: 1793 ELGITDAEGNYVDSLGADPKAVSNDYVGYATDWVNNNLPENAITNSTWTGIALGPS 1848


>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
          Length = 1333

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 392  RCNRHCEDHEKQINGP----VPFWLSKRDSWHSTVSWMYCGGQA 511
            RC RH + H  +IN      + +W    +SW+   SW+Y G +A
Sbjct: 982  RCFRH-DRHPIRINNETRRDLVWWQQFLESWNGVSSWLYPGLEA 1024


>SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 168 GPLGLSPKKVGDDIAKATSDWKG 236
           GPLG+  +++ D    ++SDW G
Sbjct: 337 GPLGMEDRRIQDSQINSSSDWDG 359


>SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)
          Length = 453

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -3

Query: 295 GTTAIWACLF*TVSCTVILRP--FQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPT 122
           G   IW     T   T+ L+   F +L  +A  +     D+ +G I    + +AP S   
Sbjct: 271 GALRIWTVAKSTPVATIRLKKTGFHALAVIATQNTNSRTDQSQGAISSTSEAIAPPSMSN 330

Query: 121 HRKFTI 104
            + FT+
Sbjct: 331 KQDFTL 336


>SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
          Length = 421

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 260 CQLHSDLETLPVTCGLGNVI 201
           C++HS  ET P+T  + N+I
Sbjct: 118 CKIHSFFETFPITINIANLI 137


>SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)
          Length = 969

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 144 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 314
           T  L P ++ PLGL PKK+  D  +    S  KGL +   +++++   + A +  A + I
Sbjct: 465 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 524


>SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 235 PFQSLVALAMSS--PTFLGDRPRGPILGAKDDVAPTSP 128
           PF +L+    SS    F+ DRPRGP  G  D +    P
Sbjct: 360 PFNALIVGPTSSGKTRFIVDRPRGPFRGKFDYIVLVCP 397


>SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10)
          Length = 291

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -3

Query: 295 GTTAIWACLF*TVSCTVILRP--FQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPT 122
           G   IW     T   T+ L+   F +L  +A  +     D+ +G I    + +AP S   
Sbjct: 109 GALRIWTVAKSTPVATIRLKKTGFHALAVIATQNTNSRTDQSQGAISSTSEAIAPPSMSN 168

Query: 121 HRKFTI 104
            + FT+
Sbjct: 169 KQDFTL 174


>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
          Length = 646

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 90  PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVG 200
           P+     +L+C G E   TSS+ P +G LG   K  G
Sbjct: 597 PSMTNTTSLKCQGDEKSGTSSITP-LGSLGTYDKSHG 632


>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
          Length = 1080

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 350 KAEKYQTQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRDSWHST 481
           + E+  T+    P RC R  ++HE   + P+P+ LS R+   +T
Sbjct: 393 RCERDSTEHDDSP-RCVRDSKEHEADTSSPLPY-LSLREKLSTT 434


>SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 144 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 314
           T  L P ++ PLGL PKK+  D  +    S  KGL +   +++++   + A +  A + I
Sbjct: 48  TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 107


>SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5)
          Length = 386

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 144 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 314
           T  L P ++ PLGL PKK+  D  +    S  KGL +   +++++   + A +  A + I
Sbjct: 263 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 322



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +3

Query: 96  EIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQN 269
           E   V    +G  +    +    + PLGL PKK+  D  +    S  KGL +   +++++
Sbjct: 306 EHSTVRYATIGDAISKIRAAGRGVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEH 365

Query: 270 RQAQIAVVPSAAALI 314
              + A +  A + I
Sbjct: 366 STVRYATIGDAISKI 380


>SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)
          Length = 773

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 392 RCNRHCEDHEKQINGP----VPFWLSKRDSWHSTVSWMYCGGQA 511
           RC RH + H  +IN      + +W    +SW+S   W+Y G +A
Sbjct: 197 RCFRH-DRHPIRINNETRHDMAWWQQFLESWNSVSFWLYPGLEA 239


>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
          Length = 944

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 144 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 314
           T  L P ++ PLGL PKK+  D  +    S  KGL +   +++++   + A +  A + I
Sbjct: 444 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 503


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,615,953
Number of Sequences: 59808
Number of extensions: 389568
Number of successful extensions: 977
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)