Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4b23
(431 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0086 - 20642873-20643033,20643384-20643504,20643698-206437... 33 0.099
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 32 0.23
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 31 0.40
06_03_0612 + 22735613-22735643,22735747-22735849,22737154-227375... 30 0.70
12_01_1058 - 10928128-10928163,10929082-10929199,10929391-109294... 29 2.1
04_04_1615 + 34793511-34793660,34794013-34794070,34794163-347944... 28 2.8
05_01_0151 - 1001851-1001898,1002227-1002311,1003064-1003225,100... 28 3.7
12_02_0708 + 22338847-22339137,22339245-22339373 27 6.5
10_06_0158 - 11320173-11320279,11320347-11321038,11321283-113215... 27 6.5
05_03_0560 + 15468430-15468437,15468971-15469052,15469132-154692... 27 8.6
03_05_0874 - 28429982-28430083,28430284-28430472,28430585-284306... 27 8.6
>03_05_0086 -
20642873-20643033,20643384-20643504,20643698-20643744,
20643882-20643921,20644331-20644418,20644949-20645161,
20645589-20645628,20646332-20646416
Length = 264
Score = 33.1 bits (72), Expect = 0.099
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = -3
Query: 300 INEARQLSVNDLNVLIKKGKLHSDTIN-LKRKRSRNNTLNNIKMKPLELAREIYSRNPTI 124
I + SV+DL L+K + +S N L + +++NN + +K + ++LAR+ + I
Sbjct: 106 IARLKDKSVDDLQRLLKDKEAYSAFFNSLDQVKTQNNLRDELKKETVQLARDNLEKEQRI 165
Query: 123 LQISKNTSTPFKDFRRLLEESGVEMERPRSNMIXHY 16
+I + ++ ++ER R ++ Y
Sbjct: 166 SEIRNQCTIIRTTELAAAQDRLADLERQRDEVMKSY 201
>03_01_0614 +
4515515-4515540,4515988-4516209,4516681-4516768,
4517084-4517123,4517259-4517305,4517464-4517584,
4517931-4518091
Length = 234
Score = 31.9 bits (69), Expect = 0.23
Identities = 20/96 (20%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = -3
Query: 300 INEARQLSVNDLNVLIKKGKLHSDTIN-LKRKRSRNNTLNNIKMKPLELAREIYSRNPTI 124
I + SV++L L+K + ++ N L + +++NN + ++ + ++LARE + I
Sbjct: 76 IARLKDKSVDELQRLLKDKEAYNAFFNSLDQVKTQNNLRDELRKETVQLARENLEKEQRI 135
Query: 123 LQISKNTSTPFKDFRRLLEESGVEMERPRSNMIXHY 16
L++ + ++ E+ER + ++ Y
Sbjct: 136 LELRNQCTIIRTTELAAAQDRLAELERQKDEIMRSY 171
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 31.1 bits (67), Expect = 0.40
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = -3
Query: 252 KKGKLHSDTINLKR-KRSRNNTLNNIKMKPLELAREIYSRNP--TILQISKNTSTPFKDF 82
++G++ + N KR K S+ N L + LE A E+ +P T L++S +
Sbjct: 960 RRGEIPGEETNTKRPKHSQENNL-----RALETAAEVVVPSPAGTGLRVSSRIANRANKL 1014
Query: 81 RRLLEESGVEMERPRSNM 28
+ +E+ V RP+SN+
Sbjct: 1015 KSKMEKEDVPSSRPKSNI 1032
>06_03_0612 +
22735613-22735643,22735747-22735849,22737154-22737511,
22737592-22738033,22738146-22738189,22738293-22738340
Length = 341
Score = 30.3 bits (65), Expect = 0.70
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 249 KGKLHSDTINLKRKRSRNNTL-NNIKMKPLELAREIYSRNPTILQISKNTSTPFK 88
KG L ++N +S+ +NI+ KP R Y+RNP I+KNT K
Sbjct: 232 KGNLKPRSLNSDAAQSKEAAKKDNIQKKPDAKVRGSYNRNPAKEAITKNTGKKAK 286
>12_01_1058 -
10928128-10928163,10929082-10929199,10929391-10929482,
10929620-10929707,10930614-10930840
Length = 186
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -1
Query: 191 RSTTSK*NRWNWHAKFIHETRPFCKYLKTPRRPLKISGGSSKSRASRWNG 42
R +++ NRWN T C + RR ++ GG S R +RW G
Sbjct: 17 RRRSTEFNRWNRTLLAAAGTVDGCFNREMTRRGAQVDGGGSDWRINRWVG 66
>04_04_1615 +
34793511-34793660,34794013-34794070,34794163-34794410,
34794485-34794601,34795309-34795369,34795860-34795954,
34796048-34796122,34796316-34796401,34796529-34796578,
34796667-34796707,34796784-34796948,34797204-34797271,
34797362-34797422,34797878-34798393
Length = 596
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 155 HAKFIHETRPFCKYLKTPRRPLKISGGSSK 66
H +F+ ET P YLK +PL+ GGS++
Sbjct: 484 HGQFV-ETTPSRPYLKIQLQPLRSGGGSAR 512
>05_01_0151 -
1001851-1001898,1002227-1002311,1003064-1003225,
1003537-1003672,1004546-1004727,1005599-1005706,
1006133-1006200,1006284-1006292
Length = 265
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 110 KTPRRPLKISGGSSKSRASRWNGRA 36
+T RR ++ GG S R+SRW G +
Sbjct: 136 ETTRRGARVDGGGSDWRSSRWVGHS 160
>12_02_0708 + 22338847-22339137,22339245-22339373
Length = 139
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 4 VAAQIMSYHVAARPFHLDARLFEEPPEIFKGRR 102
++ +MSYH A +PF A L +E E++ ++
Sbjct: 95 ISMGVMSYHGAKQPFKTRASLVKEAQELWDKKK 127
>10_06_0158 -
11320173-11320279,11320347-11321038,11321283-11321509,
11321521-11321611,11321839-11322125,11322428-11322523
Length = 499
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 191 RSTTSK*NRWNWHAKFIHETRPFCKYLKTPRRPLKISGGSSKSRASRWNG 42
R +++ +RWN T C + RR ++ GG S R +RW G
Sbjct: 69 RRRSTEFDRWNQTLLAAAGTVDGCFNREMTRRGAQVDGGGSDWRINRWVG 118
>05_03_0560 +
15468430-15468437,15468971-15469052,15469132-15469218,
15469604-15469788,15470047-15470050
Length = 121
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -3
Query: 231 DTINLKRKRSRNNTL---NNIKMKPLELAREIYSRNPTILQISK 109
D IN+ R+ N+ L + I++KP L E+ NP I IS+
Sbjct: 38 DCINMNRQPGFNHPLLKDHTIQLKPSSLLMEMDVENPFISSISE 81
>03_05_0874 -
28429982-28430083,28430284-28430472,28430585-28430655,
28430754-28431021,28432579-28432818,28433791-28433979
Length = 352
Score = 26.6 bits (56), Expect = 8.6
Identities = 18/83 (21%), Positives = 36/83 (43%)
Frame = -3
Query: 309 GMRINEARQLSVNDLNVLIKKGKLHSDTINLKRKRSRNNTLNNIKMKPLELAREIYSRNP 130
G + E ++ ++ L + K S+ + R N TL IK K +L RE+
Sbjct: 203 GEELEEMKKANIKLQEELADQKKAISEVESEVRGLQSNLTLAEIKSKEAKLQREVQEMEE 262
Query: 129 TILQISKNTSTPFKDFRRLLEES 61
+ ++ + ++++EES
Sbjct: 263 KLNKLRNGVILVKPEDKKIIEES 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,603,809
Number of Sequences: 37544
Number of extensions: 162486
Number of successful extensions: 408
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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