Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4b23
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon ge...    28   3.3  
AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.      28   3.3  
Z71267-4|CAH19105.1|  385|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z71267-3|CAA95854.1|  415|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical
           protein R186.5 protein.
          Length = 479

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -3

Query: 351 LIRGAIVFCIMLGTGMRINEARQLSVNDLNVLIKKGKLHSDTINLKRKRSR 199
           LI   IVFC+    G+RI E         N      ++H   IN+ +  SR
Sbjct: 179 LITAIIVFCLKTHPGLRIPELAPFGNFSRNHRSTSSRIHPAQINIDKANSR 229


>U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon gene
           protein 1 protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 242 FPFLISTLRSFTLSWRASLIRIPVPNMMQNTI 337
           FP L+  L+ +  +W  S++RI V N++ N +
Sbjct: 165 FPLLVEVLKLY--NWNESMVRIAVRNILLNIV 194


>AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.
          Length = 885

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 242 FPFLISTLRSFTLSWRASLIRIPVPNMMQNTI 337
           FP L+  L+ +  +W  S++RI V N++ N +
Sbjct: 158 FPLLVEVLKLY--NWNESMVRIAVRNILLNIV 187


>Z71267-4|CAH19105.1|  385|Caenorhabditis elegans Hypothetical
           protein W01A8.1b protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
 Frame = -3

Query: 276 VNDLNVLIKKG---KLHSDTINLKRKRSRNNTLNNIKMK--PLELAREIYSRNPTILQIS 112
           V +L  LI +G   K H   I+   +R+RN  L  +      L++ RE   +   +++ S
Sbjct: 217 VKNLASLIVQGVSNKAHDHVIDPINERARNY-LEQLSQSFVLLDIVRE---KKTWVIEKS 272

Query: 111 KNTSTPFKDFRRLLEESGVEMERPRSNMIXHYLSS 7
              ST   DF++ LEE   + +     M+  ++ S
Sbjct: 273 NELSTSVFDFKKTLEEEAQKYKVAPEEMLMKHIQS 307


>Z71267-3|CAA95854.1|  415|Caenorhabditis elegans Hypothetical
           protein W01A8.1a protein.
          Length = 415

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
 Frame = -3

Query: 276 VNDLNVLIKKG---KLHSDTINLKRKRSRNNTLNNIKMK--PLELAREIYSRNPTILQIS 112
           V +L  LI +G   K H   I+   +R+RN  L  +      L++ RE   +   +++ S
Sbjct: 217 VKNLASLIVQGVSNKAHDHVIDPINERARNY-LEQLSQSFVLLDIVRE---KKTWVIEKS 272

Query: 111 KNTSTPFKDFRRLLEESGVEMERPRSNMIXHYLSS 7
              ST   DF++ LEE   + +     M+  ++ S
Sbjct: 273 NELSTSVFDFKKTLEEEAQKYKVAPEEMLMKHIQS 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,341,404
Number of Sequences: 27780
Number of extensions: 148076
Number of successful extensions: 436
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)