Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4b18
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    97   3e-21
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    79   8e-16
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    62   1e-10
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    29   0.48 
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    28   1.5  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    26   4.5  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   4.5  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   6.0  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    26   6.0  

>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 58/194 (29%), Positives = 104/194 (53%), Gaps = 4/194 (2%)
 Frame = +2

Query: 125 ASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDP-- 298
           + A++F+    + KCF++++P    V    K E ++ ++  ++ T+  I + V+V +   
Sbjct: 17  SQAVHFYFDGSKPKCFLKDMPKGMMVTGIVKAEQWNNEANKWV-TSNNIKIRVQVDETFA 75

Query: 299 NDRILLSRVYSLEGMISFTSSTPGEHVICMYSNST-SWFSGSQLRVHLDIQVGEHAVDYA 475
           N+ ++          + FT++  G H IC  S S  +WFS ++ R+H+D+   +    Y 
Sbjct: 76  NNHLIYKNDLRSNEAVRFTTTNEGTHRICYLSTSDGAWFSSTKTRLHVDLASDDK---YN 132

Query: 476 NVAQKE-KLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTG 652
            +A  E +  +L  R+  L  ++  I  EQ  QR RE  FR TSES N RV+ W+++Q  
Sbjct: 133 LIASSEDEAKDLTDRVAALNTRLESILGEQMLQRSREMTFRDTSESANSRVVRWTIVQIV 192

Query: 653 VLVIIGYWQMRHLK 694
           VL++   WQ+ HL+
Sbjct: 193 VLLVTCIWQLSHLQ 206


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 78.6 bits (185), Expect = 8e-16
 Identities = 52/179 (29%), Positives = 89/179 (49%)
 Frame = +2

Query: 158 ERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILLSRVYSLE 337
           +R+CF E + ++  + V Y+  +     GG    +      + + +P  +I+   V +  
Sbjct: 30  QRECFYENLRNNDQMSVTYQTNV-----GGDQLVS------MSIYNPAGQIMHQEVPNSM 78

Query: 338 GMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLR 517
              SFT   PG+++ C Y+++     G    V  ++    H V Y +    +    L  +
Sbjct: 79  AQYSFTVKNPGKYMYCFYNDA---LDGESKEVLFNV----HGVIYISDEDLDANNPLLGK 131

Query: 518 IRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLK 694
           +RQL D + ++  EQ Y   RE   R T+ESTN RV WWS+LQT +LV +  +Q+ +LK
Sbjct: 132 VRQLHDTISKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVILVSVCVFQIFYLK 190


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 6/209 (2%)
 Frame = +2

Query: 89  SSLLVIALLADCASALYFHI---AEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQT 259
           SSL  +  L     AL F I      E  C  E + +   VIVN K         G M  
Sbjct: 7   SSLFFMLALLTVVHALNFDIPAKTNPEPFCLREYVGEKNLVIVNLKTT-------GNMGD 59

Query: 260 TPGIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLR--- 430
              + M +     N    +  V   E  ++F         IC  +  T     S+ +   
Sbjct: 60  GQTLSMMITDSSGNTHSSIQNVLG-EKSVAFDVDASAMLDICFLNTLTPGAIESEHKKRS 118

Query: 431 VHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSES 610
           V L+  VG  A DY+++ +   L  ++  IR+  D + +I  +  Y + RE RFR T+ES
Sbjct: 119 VKLEFTVGADADDYSSLQKANNLEPVEADIRRARDFIEEIKGKIYYLQAREARFRNTNES 178

Query: 611 TNQRVLWWSLLQTGVLVIIGYWQMRHLKS 697
           TN+RV  ++ L    L ++  WQ+ +L+S
Sbjct: 179 TNERVKNFAYLTFISLFVLVIWQILYLRS 207


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 531 WIKYTRSQRSRLTRGKEKSVSDKHQKAQTSGCSGGVCYRQ 650
           W+  + S+R  L + ++++V  K ++ Q   CS  VC R+
Sbjct: 266 WLSLSESERRSLVKVEKEAVLQKMKEQQKYSCSCSVCGRK 305


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 167 CFIEEIPDDTTVI-VNYKVELYDPKSGGFMQTTPGIGMHV 283
           C++ ++ DDT ++ +NY +  Y PK     Q   GI + V
Sbjct: 49  CYMFKLMDDTGIVELNYSLSKYSPKFEMLRQLQLGISVFV 88


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 173 IEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILLSR 322
           I  + DD T+I+ +++    P   G+  ++PGI +     +PN  I+  R
Sbjct: 157 IASVGDDCTLII-WRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER 205


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 1   GRVKCQFFTVAINFHSSHLCGRKHGA 78
           G  KC +  +    HS+H  G +HG+
Sbjct: 446 GNFKCAYSYLGFAIHSAHTLGLEHGS 471


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 176 EEIPDDTTVIVNYKVELYDPKSGGF 250
           +++ DD     NYKV L   KSGGF
Sbjct: 820 QQLIDDFHTNENYKVFLLSTKSGGF 844


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 363 VLDVNEIIPSNE*TRDNSILSFGSRTS 283
           V D+ EI+PS   T  NS+   GS T+
Sbjct: 533 VTDIKEILPSQHDTPHNSVKLTGSSTT 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,004
Number of Sequences: 5004
Number of extensions: 57786
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)